PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G140700.1.p
Common NameLFY, PRUPE_ppa006372mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LFY
Protein Properties Length: 416aa    MW: 46157.5 Da    PI: 7.9052
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G140700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY636.73.7e-19413971386
             FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaark.lr...eleelfkayGvryltvakiaelGftvstLvdmkdeeld 87 
                         mdp+afsaslfkwd r ++++p+ r++ eaav++++++aaaa aa++  r   +le+lf+ayGvry+t+akiaelGftv+tL+dm+d eld
  Prupe.5G140700.1.p   1 MDPDAFSASLFKWDLRGMVVPPS-RAQLEAAVTPQAAAAAAAYAAVRpQRelgGLEDLFQAYGVRYYTAAKIAELGFTVNTLLDMRDGELD 90 
                         9**************99887766.55555555544433333333322233455************************************** PP

             FLO_LFY  88 dlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsggeglgeaelvaae 177
                         d+m+sls+ifr+dllvGeryGikaavraerrrl++e+  ++rr+++s d++t aldalsqeglseepvq+eke++gsgg+   ++e+vaa+
  Prupe.5G140700.1.p  91 DMMSSLSQIFRWDLLVGERYGIKAAVRAERRRLDDED--SRRRHTFSGDTTTnALDALSQEGLSEEPVQQEKEMVGSGGGA--AWEVVAAA 177
                         ***********************************88..88888898888776************************9998..77777776 PP

             FLO_LFY 178 ekkseeekkkaskkkqkrkkkkelkse..........ededeeeeededeegsgedge...erqrehPfivtepgevargkknGLDYLfdL 255
                         + ++ +++++++k + +  + + ++            ++ d+++ +d +++g+g +g    erqrehPfivtepgevargkknGLDYLf+L
  Prupe.5G140700.1.p 178 AGEKRKKQRRTRKGQYR--NFNGIRRGhnnndhnegvDNGDDNDLDDMNGHGNGGGGGllsERQREHPFIVTEPGEVARGKKNGLDYLFHL 266
                         53333333333222222..222211112233444454333333334444444444443566****************************** PP

             FLO_LFY 256 yeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplva 346
                         yeqCr+fL+qvq+iakerGekcPtkvtnqvfr+akkagasyinkPkmrhYvhCYalhcLdeeasnalrr fkergenvGawr+acykplva
  Prupe.5G140700.1.p 267 YEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRFAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRHACYKPLVA 357
                         ******************************************************************************************* PP

             FLO_LFY 347 iaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                         iaa qgwdida+fn+hprLsiWYvPtk+rqLCh+er++a+
  Prupe.5G140700.1.p 358 IAAGQGWDIDAIFNSHPRLSIWYVPTKVRQLCHTERNNAT 397
                         *************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.8E-2001396IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDPDAFSASL FKWDLRGMVV PPSRAQLEAA VTPQAAAAAA AYAAVRPQRE LGGLEDLFQA  60
YGVRYYTAAK IAELGFTVNT LLDMRDGELD DMMSSLSQIF RWDLLVGERY GIKAAVRAER  120
RRLDDEDSRR RHTFSGDTTT NALDALSQEG LSEEPVQQEK EMVGSGGGAA WEVVAAAAGE  180
KRKKQRRTRK GQYRNFNGIR RGHNNNDHNE GVDNGDDNDL DDMNGHGNGG GGGLLSERQR  240
EHPFIVTEPG EVARGKKNGL DYLFHLYEQC RDFLIQVQNI AKERGEKCPT KVTNQVFRFA  300
KKAGASYINK PKMRHYVHCY ALHCLDEEAS NALRRVFKER GENVGAWRHA CYKPLVAIAA  360
GQGWDIDAIF NSHPRLSIWY VPTKVRQLCH TERNNATASS SASGGDGGGR DHLPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1082344151194PROTEIN LEAFY
2vy2_A1e-1082344151194PROTEIN LEAFY
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In developing inflorescences, leaf primordia and very young leaves.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G140700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1758690.0EF175869.1 Prunus persica LEAFY (LFY) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209182.10.0floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA2I8Z80.0A2I8Z8_PRUPE; LEAFY
STRINGEMJ103810.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-106floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]