PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G144400.1.p

Common Name

PRUPE_ppa008085mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 347aa MW: 38475 Da PI: 7.6275

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G144400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.3	2.8e-08	174	221	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k a +L + ++Y++sLq Prupe.5G144400.1.p 174 SHSLAERVRREKISERMKMLQRLVPGC----DKVTGRAVMLDEIINYVQSLQ 221 8***********************9....55599*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.32E-10	168	225	No hit	No description
SuperFamily	SSF47459	2.75E-16	168	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.212	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	170	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-5	174	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-10	176	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MAAFSYHPAF LLDSIFLPYT PNNINIDDHF SPSYPSEPLI QEVHNTDSRA VESSCTVDHS 60 SAKVSLSDNE PSVTKKQSTE SSTVVDKLET GEQVTQKVTS MDKKRKNRNG SSLNSAQSKA 120 SREHKGKKQK KLDGAEKAGE KKAKSDKKDQ VKVGDEPPTG YIHVRARRGQ ATDSHSLAER 180 VRREKISERM KMLQRLVPGC DKVTGRAVML DEIINYVQSL QNQVEFLSMK LASVNPLFYD 240 FGMDLGALMV KPERLSSMAS PYPSVPQCSP TQPTPFADTS PNITTNTTFS TANNYPFPDS 300 SASILLQQGQ RPNDFSQDSE SLMWDVEDQR QNFLNPSGFG NNFQLI*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MAAFSYHPAF LLDSIFLPYT PNNINIDDHF SPSYPSEPLI QEVHNTDSRA VESSCTVDHS  60
SAKVSLSDNE PSVTKKQSTE SSTVVDKLET GEQVTQKVTS MDKKRKNRNG SSLNSAQSKA  120
SREHKGKKQK KLDGAEKAGE KKAKSDKKDQ VKVGDEPPTG YIHVRARRGQ ATDSHSLAER  180
VRREKISERM KMLQRLVPGC DKVTGRAVML DEIINYVQSL QNQVEFLSMK LASVNPLFYD  240
FGMDLGALMV KPERLSSMAS PYPSVPQCSP TQPTPFADTS PNITTNTTFS TANNYPFPDS  300
SASILLQQGQ RPNDFSQDSE SLMWDVEDQR QNFLNPSGFG NNFQLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G144400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU240878	3e-80	EU240878.1 Citrus sinensis cultivar Moro Nucellare 58-8D-1 putative bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007209284.1	0.0	transcription factor bHLH137
TrEMBL	M5WMI5	0.0	M5WMI5_PRUPE; Uncharacterized protein
STRING	EMJ10483	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4182	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-58	bHLH family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G144400.1.p
Entrez Gene	18776772