PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G149400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23517.9 Da    PI: 10.5655
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G149400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien + rqvtfskRrng+lKKA+ELSvLCdaeva+ii+s++gk+y ++s
  Prupe.5G149400.1.p  9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVAIIILSPSGKIYQFAS 59
                        79***********************************************86 PP
2K-box584.1e-209217616100
               K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                         + ++e + L++ i nL+  +++l Ge+L+ L ++eL+qLe+qL++++++iRs+  +++ e+i+ l++k k++qeen +L+k++ e
  Prupe.5G149400.1.p  92 RRNNENEELRRSIANLEMRLKNLAGEELDILGMQELKQLERQLKTGVERIRSQIGRVISENISSLKRKHKAMQEENSRLQKRFHE 176
                         4578999*************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.324161IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-31279IPR002100Transcription factor, MADS-box
CDDcd002652.58E-37271No hitNo description
PRINTSPR004046.1E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.22690180IPR002487Transcription factor, K-box
PfamPF014865.2E-1793174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVAIIILSP SGKIYQFASH  60
DINRTIAMYR NQVGLPESNN SSFRRDRTME FRRNNENEEL RRSIANLEMR LKNLAGEELD  120
ILGMQELKQL ERQLKTGVER IRSQIGRVIS ENISSLKRKH KAMQEENSRL QKRFHELHHY  180
ADHASSSILG PNAYMQFFPS EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-21169169MEF2 CHIMERA
6byy_B4e-21169169MEF2 CHIMERA
6byy_C4e-21169169MEF2 CHIMERA
6byy_D4e-21169169MEF2 CHIMERA
6bz1_A5e-21169169MEF2 CHIMERA
6bz1_B5e-21169169MEF2 CHIMERA
6bz1_C5e-21169169MEF2 CHIMERA
6bz1_D5e-21169169MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G149400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211026.21e-147agamous-like MADS-box protein AGL19
TrEMBLA0A251P8P11e-145A0A251P8P1_PRUPE; Uncharacterized protein
STRINGXP_008239493.11e-130(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-43AGAMOUS-like 20