PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G150400.1.p

Common Name

PRUPE_ppa010770mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 238aa MW: 25968.1 Da PI: 4.9988

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G150400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.2	3.7e-56	49	153	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdi Prupe.5G150400.1.p 49 QLQMFWTYQrhdIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDI 139 89***999999************************************************************************** PP NF-YC 89 fdflvdivprdelk 102 fdflvdivprde+k Prupe.5G150400.1.p 140 FDFLVDIVPRDEIK 153 *********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.08E-33	35	143	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	3.2E-37	63	135	IPR009072	Histone-fold
Pfam	PF00808	8.4E-21	71	134	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDTNPNTTTT TTTPNPTQQQ QQAQSSYPPT QSSVPAPPFH HLLQQQQQQL QMFWTYQRHD 60 IEQVNDFKNH QLPLARIKKI MKADEDVRMI SAEAPVLFAK ACELFILELT IRSWLHAEEN 120 KRRTLQKNDI AAAITRTDIF DFLVDIVPRD EIKDEAVGLG GMVGATASGV PYYYPPMGQP 180 AGGPGGMMIG RPAVDPAAVY GVQPPSQAWQ SVWQTAADDG SYGSGGSSGQ GNLDGQS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-54	57	149	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	127	RRTLQKN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G150400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007209544.1	1e-177	nuclear transcription factor Y subunit C-1 isoform X1
Refseq	XP_021818316.1	1e-177	nuclear transcription factor Y subunit C-1 isoform X1
Swissprot	Q9SMP0	1e-107	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	M5WN84	1e-176	M5WN84_PRUPE; Uncharacterized protein
STRING	EMJ10743	1e-176	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11071	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	7e-85	nuclear factor Y, subunit C4

Link Out ? help Back to Top
Phytozome	Prupe.5G150400.1.p
Entrez Gene	18777035

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]