PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G152800.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 769aa    MW: 85149.8 Da    PI: 9.213
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G152800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.46e-21676756186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+ +ev +Li++r ++ +r++  k +++lWee+s+++ + g++rsp qCk+ w +l ++y++ k g++++     +++pyf++++
  Prupe.5G152800.2.p 676 KWKPEEVEKLIKMRGKLRSRFQVVKGRMALWEEISRNLLADGINRSPGQCKSLWASLVQKYEESKSGKRSQ-----KSWPYFEEMD 756
                         7******************************************************************9984.....56*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.108.7E-3846217IPR001279Metallo-beta-lactamase
SuperFamilySSF562812.46E-4450382IPR001279Metallo-beta-lactamase
PfamPF075211.3E-5323354IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.502669733IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-6671735IPR009057Homeodomain-like
SMARTSM007170.0012673735IPR001005SANT/Myb domain
PfamPF138371.6E-18674756No hitNo description
CDDcd122038.46E-20675740No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MLVSCFQTLM SLESKRLYLI PHLSKNGATK LKQLLLHMGM KITLVIPALD PRTPIFASSF  60
TMELIKKRLK EHGIFVPSRL KTFRTKRKFM AGPFEIEPVR VTHSIPDCCG LVLRCSDGTI  120
LHTGDWKIDE SPLDGRGFDR EALEELSKEG VTLMMSDSTN VLSPGRTTSE TSVADALLRH  180
ISAAKGRVIT TQFASNIHRL GSVKAAADFT GRKLVFVGMS LRTYLDAAWK DGKAPIDPSS  240
LVKVEDIDSY APKDLLIVTT GSQAEPRAAL NLASFGSSHS VKLTKEDIIL YSAKVIPGNE  300
SRVMKMLNRI SEIGSTIVMG KNEGLHTSGH GYRGELEEVL QIVKPQHFLP IHGELLFLKE  360
HELLGRSTGI RHTTVIKNGE MLGVSHLRNR RVLSNGFTLL GKENLQLKFS DGDKAFGTSS  420
ELCVDERLRV ALDGIIVVSM EILRPQNVNG LTENSIKGKI KITTRCLWLD KGKLIDALHK  480
AAHAALSSCP INCPLPHMER TVSEVLRKLV RKYSGKRPDV IAIAMENPAA VLADEVSVRL  540
SGKSHVGSEM STLRKVIDRH PYKSQSTRTQ ADEGKDNARL QSTSQQDTED SVLEDDGIEV  600
EVLLPEEDSA TSNSKSEKLS SDSEKSDDFW NAIVGLSTVD KSVEDKNGLA VQQEHLKKDG  660
PDNSEIPSSK PVKRNKWKPE EVEKLIKMRG KLRSRFQVVK GRMALWEEIS RNLLADGINR  720
SPGQCKSLWA SLVQKYEESK SGKRSQKSWP YFEEMDGALS DSEEMATK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A5e-6351526101560RIBONUCLEASE J
5a0t_B5e-6351526101560RIBONUCLEASE J
5a0v_A5e-6351526101560RIBONUCLEASE J
5a0v_B5e-6351526101560RIBONUCLEASE J
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During the early stages of embryo development, first observed at the transition stage. In the heart and torpedo stages, predominantly present in the upper part of embryos. In seedlings, strongly expressed in shoot meristems, hypocotyls, in the vascular bundles of cotyledons, and in the veins of mature leaves. In reproductive organs, detected in inflorescences, especially in sepals, filaments, and stigmas, as well as in mature siliques and seeds. {ECO:0000269|PubMed:25871650}.
UniprotTISSUE SPECIFICITY: Moslty expressed in inflorescences, seedlings, leaves, flowers and flower buds, and, to a lower extent, in stems, siliques and roots. {ECO:0000269|PubMed:25871650}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G152800.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419886.10.0uncharacterized protein LOC18777440 isoform X2
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A251P8T80.0A0A251P8T8_PRUPE; Uncharacterized protein
STRINGEMJ116970.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]