PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158300.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 561aa    MW: 61636.6 Da    PI: 4.7622
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.1e-11320343427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C+++++tGtCk+ ++CkF+H++
  Prupe.5G158300.2.p 320 ADCSYYLKTGTCKFRSNCKFNHPR 343
                         68********************96 PP
2zf-CCCH30.37e-10389414126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C++++r+  C yG +C+F+H+
  Prupe.5G158300.2.p 389 PGERDCPYYMRNLSCGYGLSCRFNHP 414
                         5789*********************9 PP
3zf-CCCH25.22.9e-08487513127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C +f+ tG Ck+ ++Ck++H++
  Prupe.5G158300.2.p 487 PGQPVCIYFSTTGDCKFKSNCKYHHPK 513
                         5789*********************96 PP
4zf-CCCH18.92.8e-06534558226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C  ++ +G+C+ G+ CkF H+
  Prupe.5G158300.2.p 534 GQNICTQYSSYGICNSGPACKFDHP 558
                         6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.666316344IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4316343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5317344IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-7320343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4322342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.737388416IPR000571Zinc finger, CCCH-type
SMARTSM003560.0067388415IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6390414IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826486514IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4486513IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5488513IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5489515IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6530557IPR000571Zinc finger, CCCH-type
SMARTSM003560.003532559IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.042532560IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4534558IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MLPAAAVAAR LLLPVSVSVV YVIYKYWRSG RQTESWVPPN RGNNDDVTPN SGNNGVVPPN  60
SVVRPKSCKN DVVPSDGDLA VVEEILKNDP VFFDKIRTLD PAVLDELLKI DPVALDELLR  120
IDPAVLRDSA ELDPAIIDAI SELSEKEEGD EEADWSCSRP VTESSLVIGV PTNSGNNDVV  180
PSNSGNNDVV PPNSGNNDVV PCPELSDRDL AILEEILKDD PVLLYEIRTH DPAVINELRK  240
FDPAVLREMV LDSAEVDPTI IDAIRKLCLK RKEEDKQEAK GSCSGRETES ENENGNETQS  300
QERDEEISRS RHYPLRPEAA DCSYYLKTGT CKFRSNCKFN HPRTTTKNNQ DHFWSGGRKD  360
GRDGSFNPRS REPFAAPFVE NFMGLPIRPG ERDCPYYMRN LSCGYGLSCR FNHPDPTPAG  420
ESDPPSGYGN GEPASLQGAS SSTAARWSAP RSLNNAPLII PPSQGIPSRN TEHNGYQQQV  480
EELPQRPGQP VCIYFSTTGD CKFKSNCKYH HPKNQTAVSP SCALNDKGLP LRPGQNICTQ  540
YSSYGICNSG PACKFDHPSL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419578.10.0zinc finger CCCH domain-containing protein 43 isoform X2
TrEMBLA0A251P9470.0A0A251P947_PRUPE; Uncharacterized protein
STRINGXP_008239400.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.15e-75C3H family protein