PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 912aa    MW: 100958 Da    PI: 7.59
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.3e-06710734226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C+ ++rt  C yG +C+F+H+
  Prupe.5G158500.1.p 710 GEKDCSCYMRTLSCMYGTKCRFNHP 734
                         6789********************9 PP
2zf-CCCH19.91.3e-06841867127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C +f+r+G Ck+ ++Ck++H++
  Prupe.5G158500.1.p 841 PGQPVCLYFSRSGDCKHKSNCKYHHPK 867
                         57899********************96 PP
3zf-CCCH22.52.1e-07885909226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C  ++++G+C+ G+ CkF+H+
  Prupe.5G158500.1.p 885 GQNICTQYSAYGICNSGPACKFNHP 909
                         6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.98708735IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.188708736IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011840867IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61840868IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4883910IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005883911IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6883908IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-5885909IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLDKI RKLGPALLDK IRKFDPDVLD  60
ELRKIDPVLL DGLRKIHPTL LDELRKVDSA VLQEMQLEPA EWDPVIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTAKENE NGNQKTQSEE TDGGGGGENK NDNGGEVMKI GEERSRSQHY  180
PVRPEAGEGK TGRKNRKNRK NRKNNQNYFR SGGQHPNLYA SPNPGNDDVL SPNPGKVDSV  240
LQVDPTELDP AIIDAICKFS LKGKEEGEQE VEVSCSTPET EIRNKNGNKR QSEERDGGGG  300
VENKNENGGQ VEKKVDDGRS RRHHYPVRPP GAGDSSHNLK TGTHKFGSNC KFNRTRGSKN  360
NQVSKDKMKE REGLAEKPGQ TECKNYFRSG GQRQNRYAPQ NPGDNDSFSP NSDVSPNPGN  420
DGVLPQNPGK DDILPQNHGD TDCDLATLRE ILRHKTALLG IIRKLDAGLF GDIQKIDPAV  480
LHEMQADPAE WDPAIIDAIC KLSLEEKDES EEEVEVSCGG PETEIRNENR YKTQSKERDG  540
GGGENKNENG GEVQKKLDEE RSRRHHYPVR PPGAGDSSHN LKTGTHQFGS NCKFNLTHRS  600
KNNQVSKNKM KEREGLAEKP GKTEFKVSKN KMKEREGLAE KPGKTECKVS KNKMKEREGL  660
AEKPGKTEFK NYFRSGGRKS GNACALNPRR GEASVAPILE NFMGLPIRPG EKDCSCYMRT  720
LSCMYGTKCR FNHPDPTPAG ESDPPSGNGN GGLASLQGAS SATAARWYAP ISLNNAPLYE  780
PIMIPPSQEF PSQNTEWNGY QATERSMPAP PPYVMNHSVT ETNTYEQYPQ QKQVQEFPER  840
PGQPVCLYFS RSGDCKHKSN CKYHHPKNQT AVPPSCDKGL LLRPGQNICT QYSAYGICNS  900
GPACKFNHPS L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201RKNRKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419582.10.0uncharacterized protein LOC18777998 isoform X1
TrEMBLA0A251PCM70.0A0A251PCM7_PRUPE; Uncharacterized protein
STRINGXP_008239395.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3988922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.17e-77C3H family protein