PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158500.13.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 654aa    MW: 72564.4 Da    PI: 8.9297
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158500.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.6e-07452476226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C+ ++rt  C yG +C+F+H+
  Prupe.5G158500.13.p 452 GEKDCSCYMRTLSCMYGTKCRFNHP 476
                          7789********************9 PP
2zf-CCCH20.58.6e-07583609127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C +f+r+G Ck+ ++Ck++H++
  Prupe.5G158500.13.p 583 PGQPVCLYFSRSGDCKHKSNCKYHHPK 609
                          57899********************96 PP
3zf-CCCH231.4e-07627651226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++ +C  ++++G+C+ G+ CkF+H+
  Prupe.5G158500.13.p 627 GQNICTQYSAYGICNSGPACKFNHP 651
                          6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.188450478IPR000571Zinc finger, CCCH-type
SMARTSM003560.98450477IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61582610IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011582609IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-5585612IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005625653IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6625650IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4625652IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5627651IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLDKI RKLGPALLDK IRKFDPDVLD  60
ELRKIDPVLL DGLRKIHPTL LDELRKVDSA VLQEMQLEPA EWDPVIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTAKENE NGNQKTQSEE TDGGGGGENK NDNGGEVMKI GEERSRSQHY  180
PVRPEAGEGK TGRKNRKNRK NRKNNQNYFR SGGQHPNLYA SPNPGKEEGE QEVEVSCSTP  240
ETEIRNKNGN KRQSEERDGG GGVENKNENG GQVEKKVDDG RSRRHHYPVR PPGAGDSSHN  300
LKTGTHKFGS NCKFNRTRGS KNNQVSKDKM KEREGLAEKP GQTECKVSKN KMKEREGLAE  360
KPGKTEFKVS KNKMKEREGL AEKPGKTECK VSKNKMKERE GLAEKPGKTE FKNYFRSGGR  420
KSGNACALNP RRGEASVAPI LENFMGLPIR PGEKDCSCYM RTLSCMYGTK CRFNHPDPTP  480
AGESDPPSGN GNGGLASLQG ASSATAARWY APISLNNAPL YEPIMIPPSQ EFPSQNTEWN  540
GYQATERSMP APPPYVMNHS VTETNTYEQY PQQKQVQEFP ERPGQPVCLY FSRSGDCKHK  600
SNCKYHHPKN QTAVPPSCDK GLLLRPGQNI CTQYSAYGIC NSGPACKFNH PSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201RKNRKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158500.13.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419586.10.0zinc finger CCCH domain-containing protein 43 isoform X5
TrEMBLA0A251P9540.0A0A251P954_PRUPE; Uncharacterized protein
STRINGXP_008239395.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-73C3H family protein