PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158500.15.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 734aa    MW: 81461.1 Da    PI: 7.4567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158500.15.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.8e-07532556226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C+ ++rt  C yG +C+F+H+
  Prupe.5G158500.15.p 532 GEKDCSCYMRTLSCMYGTKCRFNHP 556
                          6789********************9 PP
2zf-CCCH20.39.9e-07663689127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C +f+r+G Ck+ ++Ck++H++
  Prupe.5G158500.15.p 663 PGQPVCLYFSRSGDCKHKSNCKYHHPK 689
                          57899********************96 PP
3zf-CCCH22.81.6e-07707731226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++ +C  ++++G+C+ G+ CkF+H+
  Prupe.5G158500.15.p 707 GQNICTQYSAYGICNSGPACKFNHP 731
                          6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.98530557IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.188530558IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011662689IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61662690IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-5665692IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4705732IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6705730IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005705733IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-5707731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLDKI RKLGPALLDK IRKFDPDVLD  60
ELRKIDPVLL DGLRKIHPTL LDELRKVDSA VLQEMQLEPA EWDPVIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTAKENE NGNQKTQSEE TDGGGGGENK NDNGGEVMKI GEERSRSQHY  180
PVRPEAGEGK TGRKNRKNRK NRKNNQNYFR SGGQRQNRYA PQNPGDNDSF SPNSDVSPNP  240
GNDGVLPQNP GKDDILPQNH GDTDCDLATL REILRHKTAL LGIIRKLDAG LFGDIQKIDP  300
AVLHEMQADP AEWDPAIIDA ICKLSLEEKD ESEEEVEVSC GGPETEIRNE NRYKTQSKER  360
DGGGGENKNE NGGEVQKKLD EERSRRHHYP VRPPGAGDSS HNLKTGTHQF GSNCKFNLTH  420
RSKNNQVSKN KMKEREGLAE KPGKTEFKVS KNKMKEREGL AEKPGKTECK VSKNKMKERE  480
GLAEKPGKTE FKNYFRSGGR KSGNACALNP RRGEASVAPI LENFMGLPIR PGEKDCSCYM  540
RTLSCMYGTK CRFNHPDPTP AGESDPPSGN GNGGLASLQG ASSATAARWY APISLNNAPL  600
YEPIMIPPSQ EFPSQNTEWN GYQATERSMP APPPYVMNHS VTETNTYEQY PQQKQVQEFP  660
ERPGQPVCLY FSRSGDCKHK SNCKYHHPKN QTAVPPSCDK GLLLRPGQNI CTQYSAYGIC  720
NSGPACKFNH PSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201RKNRKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158500.15.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419585.10.0uncharacterized protein LOC18777998 isoform X4
TrEMBLA0A251P9410.0A0A251P941_PRUPE; Uncharacterized protein
STRINGXP_008239395.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.15e-78C3H family protein