PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158500.16.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 852aa    MW: 94478.1 Da    PI: 7.9402
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158500.16.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.2e-06650674226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +++ C+ ++rt  C yG +C+F+H+
  Prupe.5G158500.16.p 650 GEKDCSCYMRTLSCMYGTKCRFNHP 674
                          6789********************9 PP
2zf-CCCH201.2e-06781807127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C +f+r+G Ck+ ++Ck++H++
  Prupe.5G158500.16.p 781 PGQPVCLYFSRSGDCKHKSNCKYHHPK 807
                          57899********************96 PP
3zf-CCCH22.61.9e-07825849226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++ +C  ++++G+C+ G+ CkF+H+
  Prupe.5G158500.16.p 825 GQNICTQYSAYGICNSGPACKFNHP 849
                          6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.98648675IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.188648676IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011780807IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61780808IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6823848IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4823850IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005823851IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-5825849IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLDKI RKLGPALLDK IRKFDPDVLD  60
ELRKIDPVLL DGLRKIHPTL LDELRKVDSA VLQEMQLEPA EWDPVIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTAKENE NGNQKTQSEE TDGGGGGENK NDNGGEVMKI GEERSRSQHY  180
PVRPEAGEGK TGRKNRKNRK NRKNNQNYFR SGGQHPNLYA SPNPGKEEGE QEVEVSCSTP  240
ETEIRNKNGN KRQSEERDGG GGVENKNENG GQVEKKVDDG RSRRHHYPVR PPGAGDSSHN  300
LKTGTHKFGS NCKFNRTRGS KNNQNYFRSG GQRQNRYAPQ NPGDNDSFSP NSDVSPNPGN  360
DGVLPQNPGK DDILPQNHGD TDCDLATLRE ILRHKTALLG IIRKLDAGLF GDIQKIDPAV  420
LHEMQADPAE WDPAIIDAIC KLSLEEKDES EEEVEVSCGG PETEIRNENR YKTQSKERDG  480
GGGENKNENG GEVQKKLDEE RSRRHHYPVR PPGAGDSSHN LKTGTHQFGS NCKFNLTHRS  540
KNNQVSKNKM KEREGLAEKP GKTEFKVSKN KMKEREGLAE KPGKTECKVS KNKMKEREGL  600
AEKPGKTEFK NYFRSGGRKS GNACALNPRR GEASVAPILE NFMGLPIRPG EKDCSCYMRT  660
LSCMYGTKCR FNHPDPTPAG ESDPPSGNGN GGLASLQGAS SATAARWYAP ISLNNAPLYE  720
PIMIPPSQEF PSQNTEWNGY QATERSMPAP PPYVMNHSVT ETNTYEQYPQ QKQVQEFPER  780
PGQPVCLYFS RSGDCKHKSN CKYHHPKNQT AVPPSCDKGL LLRPGQNICT QYSAYGICNS  840
GPACKFNHPS L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201RKNRKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158500.16.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419583.10.0uncharacterized protein LOC18777998 isoform X2
TrEMBLA0A251PCM10.0A0A251PCM1_PRUPE; Uncharacterized protein
STRINGXP_008239395.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-77C3H family protein