PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G158500.24.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 281aa MW: 30874.8 Da PI: 8.6839

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G158500.24.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3e-07	79	103	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C yG +C+F+H+ Prupe.5G158500.24.p 79 GEKDCSCYMRTLSCMYGTKCRFNHP 103 7789********************9 PP
2	zf-CCCH	21.9	3e-07	210	236	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r+G Ck+ ++Ck++H++ Prupe.5G158500.24.p 210 PGQPVCLYFSRSGDCKHKSNCKYHHPK 236 57899********************96 PP
3	zf-CCCH	24.4	5e-08	254	278	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++++G+C+ G+ CkF+H+ Prupe.5G158500.24.p 254 GQNICTQYSAYGICNSGPACKFNHP 278 6789********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.188	77	105	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.98	77	104	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.98E-5	79	104	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.61	209	237	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0011	209	236	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-4	211	236	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-5	212	239	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.005	252	280	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.1E-6	252	277	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.0E-4	252	279	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-5	254	278	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MKEREGLAEK PGKTECKVSK NKMKEREGLA EKPGKTEFKN YFRSGGRKSG NACALNPRRG 60 EASVAPILEN FMGLPIRPGE KDCSCYMRTL SCMYGTKCRF NHPDPTPAGE SDPPSGNGNG 120 GLASLQGASS ATAARWYAPI SLNNAPLYEP IMIPPSQEFP SQNTEWNGYQ ATERSMPAPP 180 PYVMNHSVTE TNTYEQYPQQ KQVQEFPERP GQPVCLYFSR SGDCKHKSNC KYHHPKNQTA 240 VPPSCDKGLL LRPGQNICTQ YSAYGICNSG PACKFNHPSL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G158500.24.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020419582.1	0.0	uncharacterized protein LOC18777998 isoform X1
Refseq	XP_020419583.1	0.0	uncharacterized protein LOC18777998 isoform X2
Refseq	XP_020419585.1	0.0	uncharacterized protein LOC18777998 isoform X4
Refseq	XP_020419586.1	0.0	zinc finger CCCH domain-containing protein 43 isoform X5
Swissprot	Q9STM4	3e-74	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A251P941	0.0	A0A251P941_PRUPE; Uncharacterized protein
TrEMBL	A0A251P954	0.0	A0A251P954_PRUPE; Uncharacterized protein
TrEMBL	A0A251P963	0.0	A0A251P963_PRUPE; Uncharacterized protein
STRING	XP_008239395.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-76	C3H family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G158500.24.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]