PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158500.4.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 874aa    MW: 96951.9 Da    PI: 8.0102
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06672696226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C+ ++rt  C yG +C+F+H+
  Prupe.5G158500.4.p 672 GEKDCSCYMRTLSCMYGTKCRFNHP 696
                         6789********************9 PP
2zf-CCCH201.2e-06803829127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C +f+r+G Ck+ ++Ck++H++
  Prupe.5G158500.4.p 803 PGQPVCLYFSRSGDCKHKSNCKYHHPK 829
                         57899********************96 PP
3zf-CCCH22.52e-07847871226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C  ++++G+C+ G+ CkF+H+
  Prupe.5G158500.4.p 847 GQNICTQYSAYGICNSGPACKFNHP 871
                         6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.98670697IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.188670698IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011802829IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61802830IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6845870IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4845872IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005845873IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-5847871IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLDKI RKLGPALLDK IRKFDPDVLD  60
ELRKIDPVLL DGLRKIHPTL LDELRKVDSA VLQEMQLEPA EWDPVIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTAKENE NGNQKTQSEE TDGGGGGENK NDNGGEVMKI GEERSRSQHY  180
PVRPEAGEGK TGRKNRKNRK NRKNNQNYFR SGGQHPNLYA SPNPGKEEGE QEVEVSCSTP  240
ETEIRNKNGN KRQSEERDGG GGVENKNENG GQVEKKVDDG RSRRHHYPVR PPGAGDSSHN  300
LKTGTHKFGS NCKFNRTRGS KNNQVSKDKM KEREGLAEKP GQTECKNYFR SGGQRQNRYA  360
PQNPGDNDSF SPNSDVSPNP GNDGVLPQNP GKDDILPQNH GDTDCDLATL REILRHKTAL  420
LGIIRKLDAG LFGDIQKIDP AVLHEMQADP AEWDPAIIDA ICKLSLEEKD ESEEEVEVSC  480
GGPETEIRNE NRYKTQSKER DGGGGENKNE NGGEVQKKLD EERSRRHHYP VRPPGAGDSS  540
HNLKTGTHQF GSNCKFNLTH RSKNNQVSKN KMKEREGLAE KPGKTEFKVS KNKMKEREGL  600
AEKPGKTECK VSKNKMKERE GLAEKPGKTE FKNYFRSGGR KSGNACALNP RRGEASVAPI  660
LENFMGLPIR PGEKDCSCYM RTLSCMYGTK CRFNHPDPTP AGESDPPSGN GNGGLASLQG  720
ASSATAARWY APISLNNAPL YEPIMIPPSQ EFPSQNTEWN GYQATERSMP APPPYVMNHS  780
VTETNTYEQY PQQKQVQEFP ERPGQPVCLY FSRSGDCKHK SNCKYHHPKN QTAVPPSCDK  840
GLLLRPGQNI CTQYSAYGIC NSGPACKFNH PSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201RKNRKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419583.10.0uncharacterized protein LOC18777998 isoform X2
TrEMBLA0A251P9700.0A0A251P970_PRUPE; Uncharacterized protein
STRINGXP_008239395.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-77C3H family protein