PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158500.5.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 632aa    MW: 70091.5 Da    PI: 8.748
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158500.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.2e-07430454226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C+ ++rt  C yG +C+F+H+
  Prupe.5G158500.5.p 430 GEKDCSCYMRTLSCMYGTKCRFNHP 454
                         7789********************9 PP
2zf-CCCH20.58.3e-07561587127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C +f+r+G Ck+ ++Ck++H++
  Prupe.5G158500.5.p 561 PGQPVCLYFSRSGDCKHKSNCKYHHPK 587
                         57899********************96 PP
3zf-CCCH231.4e-07605629226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C  ++++G+C+ G+ CkF+H+
  Prupe.5G158500.5.p 605 GQNICTQYSAYGICNSGPACKFNHP 629
                         6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.98428455IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.188428456IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61560588IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011560587IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4562587IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-5563590IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6603628IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4603630IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005603631IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-5605629IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLDKI RKLGPALLDK IRKFDPDVLD  60
ELRKIDPVLL DGLRKIHPTL LDELRKVDSA VLQEMQLEPA EWDPVIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTAKENE NGNQKTQSEE TDGGGGGENK NDNGGEVMKI GEERSRSQHY  180
PVRPEAGEGK TGRKNRKNRK NRKNNQNYFR SGGQHPNLYA SPNPGKEEGE QEVEVSCSTP  240
ETEIRNKNGN KRQSEERDGG GGVENKNENG GQVEKKVDDG RSRRHHYPVR PPGAGDSSHN  300
LKTGTHKFGS NCKFNRTRGS KNNQVSKDKM KEREGLAEKP GQTECKVSKN KMKEREGLAE  360
KPGKTEFKVS KNKMKEREGL AEKPGKTEFK NYFRSGGRKS GNACALNPRR GEASVAPILE  420
NFMGLPIRPG EKDCSCYMRT LSCMYGTKCR FNHPDPTPAG ESDPPSGNGN GGLASLQGAS  480
SATAARWYAP ISLNNAPLYE PIMIPPSQEF PSQNTEWNGY QATERSMPAP PPYVMNHSVT  540
ETNTYEQYPQ QKQVQEFPER PGQPVCLYFS RSGDCKHKSN CKYHHPKNQT AVPPSCDKGL  600
LLRPGQNICT QYSAYGICNS GPACKFNHPS L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201RKNRKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158500.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419586.10.0zinc finger CCCH domain-containing protein 43 isoform X5
TrEMBLA0A251P9560.0A0A251P956_PRUPE; Uncharacterized protein
STRINGXP_008239395.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-79C3H family protein