PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G158500.6.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 712aa    MW: 78944.2 Da    PI: 7.0432
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G158500.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.5e-07510534226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C+ ++rt  C yG +C+F+H+
  Prupe.5G158500.6.p 510 GEKDCSCYMRTLSCMYGTKCRFNHP 534
                         6789********************9 PP
2zf-CCCH20.39.5e-07641667127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C +f+r+G Ck+ ++Ck++H++
  Prupe.5G158500.6.p 641 PGQPVCLYFSRSGDCKHKSNCKYHHPK 667
                         57899********************96 PP
3zf-CCCH22.81.6e-07685709226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++ +C  ++++G+C+ G+ CkF+H+
  Prupe.5G158500.6.p 685 GQNICTQYSAYGICNSGPACKFNHP 709
                         6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.98508535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.188508536IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011640667IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61640668IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-5643670IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4683710IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.005683711IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6683708IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5685709IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLDKI RKLGPALLDK IRKFDPDVLD  60
ELRKIDPVLL DGLRKIHPTL LDELRKVDSA VLQEMQLEPA EWDPVIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTAKENE NGNQKTQSEE TDGGGGGENK NDNGGEVMKI GEERSRSQHY  180
PVRPEAGEGK TGRKNRKNRK NRKNNQNYFR SGGQRQNRYA PQNPGDNDSF SPNSDVSPNP  240
GNDGVLPQNP GKDDILPQNH GDTDCDLATL REILRHKTAL LGIIRKLDAG LFGDIQKIDP  300
AVLHEMQADP AEWDPAIIDA ICKLSLEEKD ESEEEVEVSC GGPETEIRNE NRYKTQSKER  360
DGGGGENKNE NGGEVQKKLD EERSRRHHYP VRPPGAGDSS HNLKTGTHQF GSNCKFNLTH  420
RSKNNQVSKN KMKEREGLAE KPGKTECKVS KNKMKEREGL AEKPGKTEFK NYFRSGGRKS  480
GNACALNPRR GEASVAPILE NFMGLPIRPG EKDCSCYMRT LSCMYGTKCR FNHPDPTPAG  540
ESDPPSGNGN GGLASLQGAS SATAARWYAP ISLNNAPLYE PIMIPPSQEF PSQNTEWNGY  600
QATERSMPAP PPYVMNHSVT ETNTYEQYPQ QKQVQEFPER PGQPVCLYFS RSGDCKHKSN  660
CKYHHPKNQT AVPPSCDKGL LLRPGQNICT QYSAYGICNS GPACKFNHPS L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201RKNRKNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G158500.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419585.10.0uncharacterized protein LOC18777998 isoform X4
TrEMBLA0A251PAM30.0A0A251PAM3_PRUPE; Uncharacterized protein
STRINGXP_008239395.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.18e-81C3H family protein