PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G158600.1.p

Common Name

PRUPE_ppa018470mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 83aa MW: 9333.6 Da PI: 8.3284

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G158600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.1	8.1e-10	35	61	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+rtG Ck+ ++Ck++H++ Prupe.5G158600.1.p 35 PGQPACIYFSRTGDCKFISNCKYHHPK 61 57899********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	6.1E-4	34	61	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.831	34	62	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-7	36	61	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.89E-6	37	64	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MPTPPPYVMN YSVTETNAYE QHPQQKQVEQ LPERPGQPAC IYFSRTGDCK FISNCKYHHP 60 KNQTALFPSC ALSEKGHPLR LG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G158600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016651182.1	1e-40	PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1
TrEMBL	A0A251PCN7	9e-55	A0A251PCN7_PRUPE; Uncharacterized protein
STRING	EMJ12449	4e-54	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	5e-21	C3H family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G158600.1.p
Entrez Gene	18776668