PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G158700.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 694aa MW: 73142.4 Da PI: 8.1813

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G158700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.5	2.3e-08	130	154	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++r+ C +G +C+F+H+ Prupe.5G158700.1.p 130 GEKDCSFYMRNASCMFGTNCRFNHP 154 7889********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0031	128	155	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.638	128	156	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.97E-5	130	156	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-5	130	154	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDARLDKI RKLDPALLDK IRKFDPDVHD 60 ELYNNQVSKD KMKERDGLAA EKPGQTECKD YSRSGGRKYE KACSLNPGRG EPSVAPIPEC 120 NFLGLPIRPG EKDCSFYMRN ASCMFGTNCR FNHPDPTAAR ESEPPSGCGN GGSASLQGAS 180 SSTAAPWSAP RSLNDAPLYV PMVSPHVQIG SWGNADGVWA QSEAGNKDEA SGWTKPAFIN 240 ENQNDSWKKP SGVDDNRRAS WGKSDGGSTW TKQDGDPTWN KQGEGSTWNK QDGSSAWNKP 300 AGDSYWSKQA GWSSWGKQAD VTAGHESGGV GNQDNGWKRA SSFGGSQSMD GVNGDQPEDF 360 NNNRSGGNWR GGSGRGNSDG GGFRGGRGFV GRGGDREEDR GGFGRRWGFG GRGGDRGSFG 420 GRGRSDKGGF GGRGYGGRGR GRYQSGGWSN RNESIDNNSS GWSKGADGAG EGWKRDKGGG 480 SWNQGGGSKN DWQGRNSSGW SSQSSGWNQS DVTKGIGGSG SGWNQTVEAK YTAGTQDKGT 540 GSHNEVGTSW GNNWKSSDAS NGDQSSRWKQ STAAKEVKGN TDQDGGWNKG PSSNAQAGGW 600 GNQGSGWNKG TGSGFGGGTG EQPSAAVGGQ SSDWKQSSAA SGGQSSSWNQ SGEAKQGTEE 660 GAKLTNSWGK AAPQYLPERI LPATRLCYEP LSD*

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDARLDKI RKLDPALLDK IRKFDPDVHD  60
ELYNNQVSKD KMKERDGLAA EKPGQTECKD YSRSGGRKYE KACSLNPGRG EPSVAPIPEC  120
NFLGLPIRPG EKDCSFYMRN ASCMFGTNCR FNHPDPTAAR ESEPPSGCGN GGSASLQGAS  180
SSTAAPWSAP RSLNDAPLYV PMVSPHVQIG SWGNADGVWA QSEAGNKDEA SGWTKPAFIN  240
ENQNDSWKKP SGVDDNRRAS WGKSDGGSTW TKQDGDPTWN KQGEGSTWNK QDGSSAWNKP  300
AGDSYWSKQA GWSSWGKQAD VTAGHESGGV GNQDNGWKRA SSFGGSQSMD GVNGDQPEDF  360
NNNRSGGNWR GGSGRGNSDG GGFRGGRGFV GRGGDREEDR GGFGRRWGFG GRGGDRGSFG  420
GRGRSDKGGF GGRGYGGRGR GRYQSGGWSN RNESIDNNSS GWSKGADGAG EGWKRDKGGG  480
SWNQGGGSKN DWQGRNSSGW SSQSSGWNQS DVTKGIGGSG SGWNQTVEAK YTAGTQDKGT  540
GSHNEVGTSW GNNWKSSDAS NGDQSSRWKQ STAAKEVKGN TDQDGGWNKG PSSNAQAGGW  600
GNQGSGWNKG TGSGFGGGTG EQPSAAVGGQ SSDWKQSSAA SGGQSSSWNQ SGEAKQGTEE  660
GAKLTNSWGK AAPQYLPERI LPATRLCYEP LSD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G158700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020419598.1	0.0	protein RNA-directed DNA methylation 3 isoform X3
Refseq	XP_020419599.1	0.0	protein RNA-directed DNA methylation 3 isoform X3
TrEMBL	A0A251P975	0.0	A0A251P975_PRUPE; Uncharacterized protein
STRING	XP_008239389.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	3e-28	C3H family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G158700.1.p