PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G158900.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 73aa MW: 8333.47 Da PI: 8.938

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G158900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.2	3.7e-10	35	61	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f+rtG Ck+ ++Ck++H++ Prupe.5G158900.1.p 35 PGQPVCSYFLRTGDCKFKSNCKYHHPK 61 5789*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.5E-5	34	61	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.718	34	62	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.5E-8	36	61	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.41E-7	37	63	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.5E-5	39	60	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
MPARQPYLVN NSMTGTNVYK QYLQQQQAEE FPERPGQPVC SYFLRTGDCK FKSNCKYHHP 60 KTQTAVFPSC TL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G158900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007209937.1	6e-38	zinc finger CCCH domain-containing protein 43 isoform X1
Refseq	XP_020419600.1	2e-38	zinc finger CCCH domain-containing protein 43 isoform X2
Swissprot	Q5RJC5	9e-19	C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBL	A0A251P981	5e-47	A0A251P981_PRUPE; Uncharacterized protein
STRING	EMJ11310	1e-39	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF37996	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	4e-21	C3H family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G158900.1.p