PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G159000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 407aa    MW: 45261.7 Da    PI: 6.3755
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G159000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.5e-11192214527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          C+f+++tGtCk+G++CkF+H++
  Prupe.5G159000.1.p 192 DCSFHLKTGTCKFGSNCKFNHPR 214
                         5********************96 PP
2zf-CCCH26.41.2e-08261285226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C+f++r+  C +G +C+F+H+
  Prupe.5G159000.1.p 261 GEKDCSFYMRNASCMFGTNCRFNHP 285
                         7889********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0019187214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.807187215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5188215IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8192214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638259287IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031259286IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-6261285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5261287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLPAARLLFP VSVSVLYVLY KYLRSGRVTE LSEDIAVPLN PDNDDVVSRQ PSHVDPAILE  60
EIRKFDPAVL DEFRKFLDEF RKFDPAALDE KQKFDPAALD VIRKLDPAII DLIHKLCVKE  120
KVEGKEEAER NCSGRENEEG NGNENGNETQ SEESGGGGGE NKNENGGEVE KRVVNEEKSR  180
RHHYPVRPEA GDCSFHLKTG TCKFGSNCKF NHPRGRKTNK DYSKSGGCKY EKACSFNPRR  240
GEHSVAPILE CNFLGLPIRP GEKDCSFYMR NASCMFGTNC RFNHPDPTAA RESDPPSGYG  300
NGGPASLQGA LSSPCSAPRS LNDAPLYVPM VIPPSQGIPS QNTEWNGYQK EACLHIHPYV  360
MNHSVTGTNA YEQHPQQKQV EELPERPGQP VCIYFSRTGD CIQMRF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G159000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651182.11e-130PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1
TrEMBLA0A251P9D00.0A0A251P9D0_PRUPE; Uncharacterized protein
STRINGEMJ113100.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.18e-61C3H family protein