PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G159100.1.p
Common NamePRUPE_ppa004690mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 497aa    MW: 55295.6 Da    PI: 5.0782
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G159100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.78e-13157179426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C+++++tG Ck+G++CkF+H+
  Prupe.5G159100.1.p 157 EDCSYYLKTGSCKFGSNCKFNHP 179
                         89********************9 PP
2zf-CCCH29.41.3e-09201225327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         + +C++++r+G CkyG  C+++H++
  Prupe.5G159100.1.p 201 QTECKYYLRSGGCKYGKACRYSHSK 225
                         679********************95 PP
3zf-CCCH34.63.2e-11246270226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C++++r+G Cky ++C+F+H+
  Prupe.5G159100.1.p 246 GERECPYYMRNGSCKYASNCRFNHP 270
                         5799********************9 PP
4zf-CCCH21.93.2e-07386407627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C++f+rtG Ck+ ++Ck++H++
  Prupe.5G159100.1.p 386 CSYFLRTGDCKFKSNCKYHHPK 407
                         ********************96 PP
5zf-CCCH32.81.2e-10429452326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + +C +++r+G+Ck+G+ CkF H+
  Prupe.5G159100.1.p 429 QNICTHYSRYGICKFGPVCKFDHP 452
                         679********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-6152181IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6153180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971153181IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10157179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5159178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793198226IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5198225IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7201225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-5202226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5204225IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5244271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502244272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5245271IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8246270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4250269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22380408IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-4380407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5384408IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-5386407IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6424452IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817426454IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-5426453IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7429452IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEVSEAISVP PNLDANNNHH IDEHHQPSHS ELVFLPSSSD PDPAPSDFDH AVLDELQKLD  60
LKEKEEEEEG EDHLDEFQKL DLKEKEDAKE EEEEEDVEKK SSNGRETENE NENENESERQ  120
SEQSDGGENQ SEDGGDAEKK AEESRRRYQY PVRPEAEDCS YYLKTGSCKF GSNCKFNHPV  180
KRKGSKDKVK EREEFGDKTG QTECKYYLRS GGCKYGKACR YSHSKGKPSV APVVELNFLG  240
LPIRLGEREC PYYMRNGSCK YASNCRFNHP DPTAAGGSDP ASAFGNGGPA SLQGAPQSTV  300
APWSAPRSLN ETPPYMPMMI PPSQGVPSQN TEWNGYQAPA YLPERSMPAR QPYLMNNSMT  360
ETNIYKQYPQ HQQAEEFPER PGQPFCSYFL RTGDCKFKSN CKYHHPKTQT AVSPQCALSD  420
KGLPLRPDQN ICTHYSRYGI CKFGPVCKFD HPLNITSSTT SGPDHQLPFS DSATTNGAGT  480
AGSRSGTDAI SHPQPV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G159100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209937.10.0zinc finger CCCH domain-containing protein 43 isoform X1
SwissprotQ9STM41e-132C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLM5WCW00.0M5WCW0_PRUPE; Uncharacterized protein
STRINGEMJ111360.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-132C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]