PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G183200.4.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 259aa MW: 27479.5 Da PI: 6.303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G183200.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33	1.1e-10	160	207	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Prupe.5G183200.4.p 160 SHSLAERARREKISERMKLLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 207 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.98E-9	154	211	No hit	No description
SuperFamily	SSF47459	7.46E-18	154	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.682	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-18	156	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-8	160	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-10	162	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDPPLINESS FSAANPSAYS LAEIWPFSGE PGGSGGGLGL RMGSLGGLGD SSVNRDGSLE 60 ESTVTEQSGG GGGRKRRDVS SEDESSKLVS TSSASGLKDS SGKRMKLAGS QNENGGSKAE 120 VEESSAAGDN KPAEQSTKPS EPPKQDFIHV RARRGQATDS HSLAERARRE KISERMKLLQ 180 DLVPGCNKVI GKALVLDEII NYIQSLQHQV EFLSMKLEAV NSRMNLNPTI EAFPSKDLFN 240 LRDTSRNVNV CQPSSLGK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.4505	2e-44	fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G183200.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP689421	0.0	KP689421.1 Prunus pseudocerasus isolate Unigene13496 bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020419164.1	0.0	transcription factor bHLH79 isoform X2
Swissprot	Q9LV17	3e-82	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A251PAF5	0.0	A0A251PAF5_PRUPE; Uncharacterized protein
STRING	EMJ10654	1e-170	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	4e-81	bHLH family protein

Link Out ? help Back to Top
Phytozome	Prupe.5G183200.4.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]