PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G208300.3.p
Common NamePRUPE_ppa003644mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 388aa    MW: 42388.2 Da    PI: 7.6994
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G208300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.47.2e-421388277
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                        Cqv gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  Prupe.5G208300.3.p 13 CQVYGCNKDLSSSKDYHKRHKVCEAHSKTAKVIVNGREQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 88
                        **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.1E-34874IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.3681087IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-391191IPR004333Transcription factor, SBP-box
PfamPF031105.3E-321386IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MRVSGLYSQT AYCQVYGCNK DLSSSKDYHK RHKVCEAHSK TAKVIVNGRE QRFCQQCSRF  60
HLLAEFDDGK RSCRKRLAGH NERRRKPQVG IHSGRAGSRF QDNMLTTASF ICQEILPSGI  120
LDAENYGTND WCRHLKVEDA THYRPLSGVP VTNGHLPLKP AFPSYDIGKR YPPFHDNGTN  180
PLTGNIIIEN GSQYSHDMRG LNSGSHSMFH ETTTLGSEDF NVFNTASTVH GLSGISDSGC  240
ALSLLSSQSQ KSSSHLSGIP MASPLVMPDR HTNYRLVQGS ENLIGGCSHA SSSGVSNKFP  300
SSGMNSGAGT HLGPILLCNG SDTDDFGISD GIFQGSDFVN AKDRLSCEDG TTIDLLQLSS  360
QLQRVEDQRQ SMQVKQESDA FCCLRIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-2813861184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G208300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819324e-46LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132664e-46LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418905.10.0squamosa promoter-binding-like protein 18 isoform X2
TrEMBLA0A251PBG80.0A0A251PBG8_PRUPE; Uncharacterized protein
TrEMBLA0A251PBH20.0A0A251PBH2_PRUPE; Uncharacterized protein
STRINGXP_008240083.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.15e-47SBP family protein