PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G214400.1.p
Common NamePRUPE_ppa011971mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 190aa    MW: 21118.2 Da    PI: 4.5222
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G214400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB67.13.3e-21531261285
               NF-YB  12 nvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                          +++i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al  lGf +y+e++  
  Prupe.5G214400.1.p  53 TMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSREEKRTIAPEHVLKALQVLGFSEYIEEVYS 126
                         6789*****************************************************************98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-35920IPR009072Histone-fold
PfamPF008081.9E-1853112IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.47E-3053175IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-3554173IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEPMDIIGKS KEDASLPKAI VFEFCHRSIL ATSVAIGFGG LSLLLNPWVI FTTMTKIIKE  60
MLPPDVRVAR DAQDLLIECC VEFINLISSE SNEVCSREEK RTIAPEHVLK ALQVLGFSEY  120
IEEVYSAYEQ HKLETMHDVA KSVKWGNGAE MTEEEALAEQ QRMFAEARAR MNGGATAPKQ  180
PDPEQSLES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-295416821133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.131630.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G214400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209646.11e-105protein Dr1 homolog
SwissprotP495922e-85NC2B_ARATH; Protein Dr1 homolog
TrEMBLM5WC151e-138M5WC15_PRUPE; Uncharacterized protein
STRINGEMJ108461e-139(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.29e-88nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]