PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G214400.2.p

Common Name

PRUPE_ppa011971mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YB

Protein Properties

Length: 157aa MW: 17513.9 Da PI: 4.4319

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G214400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	76.3	4.5e-24	11	93	3	85
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al lGf +y+e++ Prupe.5G214400.2.p 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCSREEKRTIAPEHVLKALQVLGFSEYIEEVYS 93 6899**************************************************************************98754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.8E-39	9	141	IPR009072	Histone-fold
SuperFamily	SSF47113	1.76E-34	12	142	IPR009072	Histone-fold
Pfam	PF00808	1.3E-21	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MEPMDIIGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE 60 VCSREEKRTI APEHVLKALQ VLGFSEYIEE VYSAYEQHKL ETMHDVAKSV KWGNGAEMTE 120 EEALAEQQRM FAEARARMNG GATAPKQPDP EQSLES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-33	12	135	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.13163	0.0	fruit

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G214400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007209646.1	1e-113	protein Dr1 homolog
Swissprot	P49592	1e-92	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	M5WVN3	1e-111	M5WVN3_PRUPE; Uncharacterized protein
STRING	XP_008244062.1	1e-111	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	6e-95	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	Prupe.5G214400.2.p
Entrez Gene	18777223

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]