PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G216800.2.p

Common Name

PRUPE_ppa005116mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 383aa MW: 42613 Da PI: 4.4074

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G216800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	65	81	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 y+Cp+Cgk+++ + L+ Prupe.5G216800.2.p 65 YVCPNCGKRYNALDALQ 81 9**********999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00531	6.4E-17	4	113	IPR002853	Transcription initiation factor IIE subunit alpha, N-terminal
SuperFamily	SSF57783	1.96E-9	51	106	No hit	No description
Gene3D	G3DSA:3.30.40.10	2.9E-21	51	110	IPR013083	Zinc finger, RING/FYVE/PHD-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006367	Biological Process	transcription initiation from RNA polymerase II promoter
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MHNAAVAATI DGLPAKEGEE KVKMHTHSYC CLDYAQISDV VRYRVQRMKK KLKDELEDKN 60 TVQEYVCPNC GKRYNALDAL QLVSMEDEYF HCESCNGELV AESDKLASQE VGDGDDNARR 120 RRREKLKDLL QKMEAQLKPI YDQLNRVKDL PAPEFGGLQA WEARASAAKR AENGESNGMD 180 PSKSSHGLGY GGTPMPFLGD TKVEVDFSGV EGKGKDIKSE ADGAGLKVLP PWMIKQGMNL 240 TKEQRGEVKQ EAKMDGSGSL AAPEYSEDKK FNTENNEKNL QDEYLKAYYA ALIKRQEEEE 300 AKKAQESSET RVSDAPSGMS PSRQVGMKSK RDEDEGDDNV DWEEAPITGN EENYKVNDLN 360 VEADATAEAE AEDEDDIDWE EG*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MHNAAVAATI DGLPAKEGEE KVKMHTHSYC CLDYAQISDV VRYRVQRMKK KLKDELEDKN  60
TVQEYVCPNC GKRYNALDAL QLVSMEDEYF HCESCNGELV AESDKLASQE VGDGDDNARR  120
RRREKLKDLL QKMEAQLKPI YDQLNRVKDL PAPEFGGLQA WEARASAAKR AENGESNGMD  180
PSKSSHGLGY GGTPMPFLGD TKVEVDFSGV EGKGKDIKSE ADGAGLKVLP PWMIKQGMNL  240
TKEQRGEVKQ EAKMDGSGSL AAPEYSEDKK FNTENNEKNL QDEYLKAYYA ALIKRQEEEE  300
AKKAQESSET RVSDAPSGMS PSRQVGMKSK RDEDEGDDNV DWEEAPITGN EENYKVNDLN  360
VEADATAEAE AEDEDDIDWE EG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	124	RRRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G216800.2.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007209982.1	0.0	general transcription factor IIE subunit 1
TrEMBL	A0A251PDH3	0.0	A0A251PDH3_PRUPE; Uncharacterized protein
TrEMBL	M5WD06	0.0	M5WD06_PRUPE; Uncharacterized protein
STRING	EMJ11181	0.0	(Prunus persica)

Link Out ? help Back to Top
Phytozome	Prupe.5G216800.2.p
Entrez Gene	18775929