PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.5G222200.1.p

Common Name

PRUPE_ppa015301mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 285aa MW: 31833.4 Da PI: 5.43

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.5G222200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.2e-08	175	222	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + sk + a +L + ++Y++sLq Prupe.5G222200.1.p 175 SHSLAERVRRGKINERLRCLQNIVPGC----SKTMGMAVMLDEIINYVQSLQ 222 8***********************9....788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-16	169	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.19E-9	169	226	No hit	No description
PROSITE profile	PS50888	14.704	171	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-16	171	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-5	175	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	177	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MAEFTADMQS IAPSLPFLDI APNTNMEPIN QYTDQFNPTV LDFYSSLNFQ TCMPFSNDNY 60 FSSQGPEFQG NLVQNFPNFF DHDNKSNQND EAPAVQHLVG AGVGNGFQES KKRRAMDDVS 120 EGSSGISTPP VSETGVKRKN SSGRGKRLKK SNEKEDEKPK DVVHVRARRG QATDSHSLAE 180 RVRRGKINER LRCLQNIVPG CSKTMGMAVM LDEIINYVQS LQNQVEFLSM KLTAASSFYD 240 FNSETDDMET MQSAKVYEAA ELERMKREGY GGYGSFHSTW PLNT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	148	KRKNSSGRGKRLK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.5G222200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007210857.1	0.0	transcription factor BEE 1
Swissprot	Q8GWK7	2e-61	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	M5WFH9	0.0	M5WFH9_PRUPE; Uncharacterized protein
STRING	EMJ12056	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3360	34	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	7e-64	BR enhanced expression 3

Link Out ? help Back to Top
Phytozome	Prupe.5G222200.1.p
Entrez Gene	18777136

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]