PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G239100.1.p
Common NamePRUPE_ppa004447mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 510aa    MW: 57066.8 Da    PI: 8.4968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G239100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-065577123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F r  nL+ H r+H
  Prupe.5G239100.1.p 55 YVCEICNQGFQRDQNLQMHRRRH 77
                        9*********************9 PP
2zf-C2H215.26.1e-05132154123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C +C+k +  +s++k H++t+
  Prupe.5G239100.1.p 132 WVCDKCSKGYAVQSDYKAHLKTC 154
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.48E-55477No hitNo description
Gene3DG3DSA:3.30.160.602.1E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975577IPR007087Zinc finger, C2H2
PROSITE patternPS01359057137IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035521096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.2E-4123153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.48E-5127152No hitNo description
SMARTSM0035565132159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MLPNNSSSSV PSSEPFSCLE NGNTNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VKKRVFVCPE PSCLHHDPCH ALGDLVGIKK  120
HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC  180
NMDRVRSESQ ALQPAACLSR TASSPSPSCS DNNFSRAPPN WPPPSNLVLP HPNPTEYTKL  240
ILTSSTSPPA HPDHLQPTLV SNKALYNLDL QLATTSNNIP INEVSSVSSK REENHSTQLQ  300
LSIGSCDFGG GELHQNKNVE HSNFMITNRN YSPRDKEMRE RESSSTTTNH HEHDDDQKPK  360
PSAGISISAA SSRLKEEARE QLRLAMAEKA YAEEARRQAE HQIELAEKEF ANAKRIRQQA  420
QAELDKAQAL KEQAIKKVNS TILQITCHAC KQQFIQADHP TTRSRATPTP THEAINHSLV  480
LSYMSSAITS EGDPLDNNNI RPHHAKPDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-17128181356Zinc finger protein JACKDAW
5b3h_F1e-17128181356Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.166460.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons and the vasculature of reosette leaves. Weak expression in hypocotyls and floral organs, but not detected in roots and inflorescence stems. {ECO:0000269|PubMed:24039602}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G239100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209918.10.0protein SHOOT GRAVITROPISM 5
SwissprotQ9C9X71e-126IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLM5WBI60.0M5WBI6_PRUPE; Uncharacterized protein
STRINGEMJ111170.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-122indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]