PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G243900.1.p
Common NamePRUPE_ppa021886mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25408.5 Da    PI: 9.1536
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G243900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.4e-201564150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krie++  r vtfskRr g+ KKA+EL +LC+aev v++fs++gk + y+
  Prupe.5G243900.1.p 15 KRIEDQDDRLVTFSKRRSGVYKKASELATLCGAEVGVVVFSPSGKPFSYA 64
                        79******************************************988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-30766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.96767IPR002100Transcription factor, MADS-box
CDDcd002655.98E-33878No hitNo description
SuperFamilySSF554554.97E-28893IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-21929IPR002100Transcription factor, MADS-box
PfamPF003197.0E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-212944IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-214465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEGRKTKGRQ KIEMKRIEDQ DDRLVTFSKR RSGVYKKASE LATLCGAEVG VVVFSPSGKP  60
FSYANSSIDS IANRFLNGHR HHHQHHDYDH DQNHDNIDDN IMNLDAIDRS RHTIVEAYRQ  120
VRIDEMNKKH NELVSELEVE RERGKALQQR MKAKAKEISS SAEAAGSIRS RSSSSKSQLQ  180
GWWEAPIEEL DLKGLKQLHA SFQHLCNDLR PALTCLNNLN PR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-16889182Myocyte-specific enhancer factor 2A
3kov_B7e-16889182Myocyte-specific enhancer factor 2A
3kov_I7e-16889182Myocyte-specific enhancer factor 2A
3kov_J7e-16889182Myocyte-specific enhancer factor 2A
3p57_A7e-16889182Myocyte-specific enhancer factor 2A
3p57_B7e-16889182Myocyte-specific enhancer factor 2A
3p57_C7e-16889182Myocyte-specific enhancer factor 2A
3p57_D7e-16889182Myocyte-specific enhancer factor 2A
3p57_I7e-16889182Myocyte-specific enhancer factor 2A
3p57_J7e-16889182Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G243900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419737.11e-128agamous-like MADS-box protein AGL62
TrEMBLM5WC391e-165M5WC39_PRUPE; Uncharacterized protein
STRINGEMJ113271e-165(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-29AGAMOUS-like 29