PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G014800.2.p
Common NamePRUPE_ppa009199mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 229aa    MW: 24208.2 Da    PI: 9.1311
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G014800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.2e-083156227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt+lC+ +     Ck+Gd+C+FaHg+
  Prupe.6G014800.2.p 31 KTRLCNKYNTVEGCKFGDKCHFAHGE 56
                        8*********99************96 PP
2zf-CCCH36.86.5e-12195220127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC +f + GtC +GdrC+FaHgp
  Prupe.6G014800.2.p 195 FKTKLCENFTK-GTCTFGDRCHFAHGP 220
                         69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-142760IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-82860IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7042957IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-42956IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-63156IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.25E-1495171IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.7E-16100170IPR004088K Homology domain, type 1
SMARTSM003222.9E-11100170IPR004087K Homology domain
PROSITE profilePS5008413.963101165IPR004088K Homology domain, type 1
PfamPF000131.9E-11103167IPR004088K Homology domain, type 1
CDDcd001056.83E-15103165No hitNo description
Gene3DG3DSA:4.10.1000.109.7E-17192224IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-9193224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.469194221IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-8194220IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9195220IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTGSNPTLPP PPRNSAAPPS FPDGSSPPSV KTRLCNKYNT VEGCKFGDKC HFAHGEWELG  60
RPTAQSYEDP RGGGGYPGRM GGGRMEPPQQ THGAAARFGA TATAKISVDA SLAGAIIGKN  120
GVNSKQICRV TGAKLSIREH ESDPKLRNIE LEGTFDQIKD ASAMVRELIV NVSSAAGPHM  180
RNNPGMAASA PASNFKTKLC ENFTKGTCTF GDRCHFAHGP EELRRQGM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G014800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205631.11e-169zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R02e-81C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A251NKD31e-168A0A251NKD3_PRUPE; Uncharacterized protein
TrEMBLM5WJ431e-167M5WJ43_PRUPE; Uncharacterized protein
STRINGEMJ068301e-168(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-54C3H family protein