PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G070100.1.p
Common NamePRUPE_ppa021945mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 204aa    MW: 22851.2 Da    PI: 7.7412
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G070100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000122850123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ Fs+   L  H++ H
  Prupe.6G070100.1.p 28 YECTFCKRGFSNAQALGGHMNIH 50
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.3E-72555No hitNo description
Gene3DG3DSA:3.30.160.601.5E-52554IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00992850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5722855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MESDQAIQEN SEQVSDDKQG ASQAAKSYEC TFCKRGFSNA QALGGHMNIH RKDKAKLKQV  60
SSSNTIETKQ HQQQQQRLLD IPKMPSSYSS PIVPTINSSE HNKLKPSRDA ERNTSTWPWF  120
LNEEGDATMR HNIDPNHLSQ VQQQLPLFSQ ATSQARVHEN PGLRQVHGDQ GLQPSASELD  180
LELRLGPERQ DSSSKANTTR KFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G070100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3704934e-78HM370493.1 Malus domestica zinc finger protein (SUP11) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206630.11e-151transcriptional regulator SUPERMAN
TrEMBLM5W2821e-149M5W282_PRUPE; Uncharacterized protein
STRINGEMJ078291e-150(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-16C2H2 family protein