PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G093900.1.p
Common NamePRUPE_ppa011528mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 215aa    MW: 23223.3 Da    PI: 5.6023
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G093900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.35.6e-43491481100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+
  Prupe.6G093900.1.p  49 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQ 139
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         a+la++++e
  Prupe.6G093900.1.p 140 AQLAKAQAE 148
                         *****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.31348149IPR004883Lateral organ boundaries, LOB
PfamPF031954.2E-4349146IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MECSNETMNT NYTTTSSTPL SQSPSSSPSS PPPPLPPTPT PNPPVVISPC AACKILRRRC  60
AEKCVLAPYF PPTEPAKFTI AHRVFGASNI IKFLQELPES QRADAVSSMV YEASARIRDP  120
VYGCAGAICH LQKQVNELQA QLAKAQAELV NMQCQQANLV ALICMEMTQS NDQGSPQQSL  180
DHNFITSSHG SNQGNISFLD DTTTLGSLWE PLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-44411563118LOB family transfactor Ramosa2.1
5ly0_B5e-44411563118LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G093900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205910.21e-158LOB domain-containing protein 1
SwissprotQ9LQR02e-78LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A251NML01e-157A0A251NML0_PRUPE; Uncharacterized protein
STRINGEMJ071091e-152(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-70LOB domain-containing protein 1