PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G097700.3.p
Common NamePRUPE_ppa001557mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 639aa    MW: 71274.4 Da    PI: 7.6892
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G097700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.7e-232103199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD v+F   
  Prupe.6G097700.3.p   2 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVSGDAVLFL-- 89 
                         99****************************963.3445679************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         + +++el+++++r+
  Prupe.6G097700.3.p  90 RGENGELRLGIRRA 103
                         4499999****996 PP
2Auxin_resp119.13.6e-39129209282
          Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                         a+a+stks+F+v+Y+Pras++eFv++++k+++++ ++v+ G+Rfkm+f+ +ds+err+sG+v+g+sdldp+ WpnSkWr+L
  Prupe.6G097700.3.p 129 ANAISTKSMFHVFYSPRASHAEFVIPYQKYVRSIANPVTTGTRFKMRFDRDDSPERRCSGVVTGISDLDPYGWPNSKWRCL 209
                         789*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.27E-421113IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-381112IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-221102No hitNo description
PROSITE profilePS5086312.832104IPR003340B3 DNA binding domain
PfamPF023622.5E-212103IPR003340B3 DNA binding domain
SMARTSM010192.2E-232104IPR003340B3 DNA binding domain
PfamPF065074.9E-33129209IPR010525Auxin response factor
SuperFamilySSF542775.43E-10508589No hitNo description
PROSITE profilePS5174521.263510594IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGV EWRFRHIYRG  60
QPRRHLLTTG WSIFISQKNL VSGDAVLFLR GENGELRLGI RRAVRPRNGL PDSIVGNQNS  120
YPSVLSLLAN AISTKSMFHV FYSPRASHAE FVIPYQKYVR SIANPVTTGT RFKMRFDRDD  180
SPERRCSGVV TGISDLDPYG WPNSKWRCLM VRWDEDIGND HQERVSLWEI DPSVSLPPLS  240
IQSSPRLMKK LRTSLQTTPP NNSITAGGGG FMDFEESVKS SKVLQGQENI GFISPLYGCD  300
TVNRPQDFEM QAPAHPSLAL NATQKATIGE LMRARHSTYT GFAESDRFPK VLQGQEICPL  360
RSLTGKANFT LGDWESNLGC TSYNIYQAPK PNFFSLASES LPNIYFPYGD IRRAGQDPVM  420
CSNATNLPRE NMKINPYSMQ MGVARNEVGR PNKPSEHKPQ ESSSAPPTLV QNPRNPNDED  480
FNGTVTGCKL FGFSLTGENP TPNSQSSSKR SCTKVHKQGS LVGRAIDLSK LNGYGDLLSE  540
LERLFSMEGL LRDSDKGWRI LYTDSENDVM VVGDDPWHEF CNVVSKIHIY TQEEVEKMTI  600
GMISDDTQSC LEQAPVMLEM SKSSSVSQPD SSPTVIRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-882232124354Auxin response factor 1
4ldy_B2e-882232124354Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G097700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204943.10.0auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLM5VXH60.0M5VXH6_PRUPE; Auxin response factor
STRINGEMJ061420.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]