PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G099600.1.p
Common NamePRUPE_ppa018528mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 222aa    MW: 25045.6 Da    PI: 10.3786
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G099600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC43.95.2e-14111203799
               NF-YC   7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                         e+++e+++++k  ++P+ r+k+i+++++   +is +a  l+ ka e f+ ++   +   + + ++++l    ++++v++ + +dfl d vp
  Prupe.6G099600.1.p 111 EEEVEEKEEMKSYTFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQKFCEDAHACCVKDRKKSLAYKHLSTVVSKRKRYDFLSDYVP 201
                         467999**********************999***********************************************************9 PP

               NF-YC  98 rd 99 
                         ++
  Prupe.6G099600.1.p 202 EK 203
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.32E-18105202IPR009072Histone-fold
PfamPF008081.7E-15124187IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.2E-22125202IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MATPGKATTP KKSKETKKPS SKAITPKKNQ ETKKPSIKKT TETKKPGTKK TISDKNQTSN  60
GNVSDSDVEE IPSSSSESLK DTKQNGGKIT KTPTPKSKQS NKKRKQKQEE EEEVEEKEEM  120
KSYTFPMERV KRIIRSEDSE MRISHDAVFL VNKATEKFLQ KFCEDAHACC VKDRKKSLAY  180
KHLSTVVSKR KRYDFLSDYV PEKVKAEDAL AKRKLAEAKA D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173191RKKSLAYKHLSTVVSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G099600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208483.11e-157DNA polymerase epsilon subunit C
TrEMBLM5W7G11e-156M5W7G1_PRUPE; Uncharacterized protein
STRINGEMJ096821e-156(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-29nuclear factor Y, subunit C10