PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G099600.3.p
Common NamePRUPE_ppa018528mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 220aa    MW: 24905.4 Da    PI: 10.3786
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G099600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC35.52.1e-11111201799
               NF-YC   7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                         e+++e+++++k  ++P+ r+k+i+++++   +is +a  l+ ka e f+ ++   +   + + ++++l    ++  v++ + +dfl d vp
  Prupe.6G099600.3.p 111 EEEVEEKEEMKSYTFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQKFCEDAHACCVKDRKKSLAYKHLF--VSKRKRYDFLSDYVP 199
                         467999**********************999*************************999999999999998875..89999*********9 PP

               NF-YC  98 rd 99 
                         ++
  Prupe.6G099600.3.p 200 EK 201
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.98E-16105199IPR009072Histone-fold
PfamPF008081.7E-14124183IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.2E-19125200IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MATPGKATTP KKSKETKKPS SKAITPKKNQ ETKKPSIKKT TETKKPGTKK TISDKNQTSN  60
GNVSDSDVEE IPSSSSESLK DTKQNGGKIT KTPTPKSKQS NKKRKQKQEE EEEVEEKEEM  120
KSYTFPMERV KRIIRSEDSE MRISHDAVFL VNKATEKFLQ KFCEDAHACC VKDRKKSLAY  180
KHLFVSKRKR YDFLSDYVPE KVKAEDALAK RKLAEAKAD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173189RKKSLAYKHLFVSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G099600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208483.11e-128DNA polymerase epsilon subunit C
TrEMBLA0A251NMT41e-154A0A251NMT4_PRUPE; Uncharacterized protein
STRINGEMJ096821e-127(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.17e-26nuclear factor Y, subunit C10