PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G099600.4.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 205aa    MW: 23304.6 Da    PI: 10.2698
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G099600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC26.81.1e-08111162758
               NF-YC   7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfilel 58 
                         e+++e+++++k  ++P+ r+k+i+++++   +is +a  l+ ka e f+ ++
  Prupe.6G099600.4.p 111 EEEVEEKEEMKSYTFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQKF 162
                         467999**********************999****************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.84E-1696193IPR009072Histone-fold
PfamPF008081.6E-14124183IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.4E-17125200IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MATPGKATTP KKSKETKKPS SKAITPKKNQ ETKKPSIKKT TETKKPGTKK TISDKNQTSN  60
GNVSDSDVEE IPSSSSESLK DTKQNGGKIT KTPTPKSKQS NKKRKQKQEE EEEVEEKEEM  120
KSYTFPMERV KRIIRSEDSE MRISHDAVFL VNKATEKFLQ KFCEDAHACC VKDRKKSLAY  180
KHLFRLCGAY QRNLFLIHLL ETDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G099600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208483.11e-104DNA polymerase epsilon subunit C
TrEMBLA0A251NMT91e-145A0A251NMT9_PRUPE; Uncharacterized protein
STRINGEMJ096821e-103(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.19e-21nuclear factor Y, subunit C10