PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G099600.5.p

Common Name

PRUPE_ppa018528mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 184aa MW: 20736.6 Da PI: 10.3923

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G099600.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	26.4	1.4e-08	111	161	7	57
NF-YC 7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfile 57 e+++e+++++k ++P+ r+k+i+++++ +is +a l+ ka e f+ + Prupe.6G099600.5.p 111 EEEVEEKEEMKSYTFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQK 161 467999********************999*************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.44E-15	96	183	IPR009072	Histone-fold
Pfam	PF00808	1.8E-14	124	183	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.3E-15	125	183	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MATPGKATTP KKSKETKKPS SKAITPKKNQ ETKKPSIKKT TETKKPGTKK TISDKNQTSN 60 GNVSDSDVEE IPSSSSESLK DTKQNGGKIT KTPTPKSKQS NKKRKQKQEE EEEVEEKEEM 120 KSYTFPMERV KRIIRSEDSE MRISHDAVFL VNKATEKFLQ KFCEDAHACC VKDRKKSLAY 180 KHL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G099600.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007208483.1	1e-128	DNA polymerase epsilon subunit C
TrEMBL	M5W7G1	1e-126	M5W7G1_PRUPE; Uncharacterized protein
STRING	EMJ09682	1e-127	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	1e-19	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Prupe.6G099600.5.p
Entrez Gene	18774921