PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G102800.1.p
Common NamePRUPE_ppa002082mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 720aa    MW: 79306.5 Da    PI: 7.7193
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G102800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.21.3e-22112213199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +++ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF  
  Prupe.6G102800.1.p 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHSEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL- 199
                         89****************************996555555..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Prupe.6G102800.1.p 200 -RAENGDLCVGIRRA 213
                         .4488999****997 PP
2Auxin_resp117.31.3e-38286369183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++FevvY+Prast+eF+vk++ v++a++v+++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Prupe.6G102800.1.p 286 AATMAANGQAFEVVYYPRASTPEFCVKASAVRAAMRVQWCSGMRFKMAFETEDSSRISWfMGTIASVQVSDPIRWPNSPWRLLQ 369
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-37102215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-29105217IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-20111212No hitNo description
SMARTSM010191.7E-21112214IPR003340B3 DNA binding domain
PfamPF023621.2E-20112213IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449112214IPR003340B3 DNA binding domain
PfamPF065071.2E-33286369IPR010525Auxin response factor
PROSITE profilePS5174519.289607687IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MRDSERSLDP QLWHACAGGM VHMPPVNSKV FYFPQGHAEH AQAHVDFSSA SLRIPSLILC  60
RVASIKFMAD PETDEVFAKI KLNPIENNEP YASDEDSMEA DGSENQEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVIAKDVHSE IWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGLDGA GGPELASGWN NSHGGGSGAC  240
VLPYGGFSVF LREEENKMVR NGGGNLSPNG NLRGKGRVRP ESVVEAATMA ANGQAFEVVY  300
YPRASTPEFC VKASAVRAAM RVQWCSGMRF KMAFETEDSS RISWFMGTIA SVQVSDPIRW  360
PNSPWRLLQV TWDEPDLLQN VKCVSPWLIE LVSNFPMIHM SPFSPPRKKL RLPQPDFTLD  420
GQLTLPSFSG NPLGPSSPLC CLPDNTPAGI QGARHAQFRI SLSDLHVNNK LQSGLFQSSF  480
QRFDQNSRIS SGIRAGHTSS NENLSCLLTM GNSSQNSEKS DNVKKHQFLL FGQPILTEQQ  540
ISRSCSSDAV SQLLTGKDSK DGNQDRTKFL SDGSKSAHGM QVSLEKSSNA GFPWNKDFQG  600
SDFDLETGHC KVFMESEDVG RTLDLSVLGS YEELYRRLAN MFGIEKPQML SHVLYRDVTG  660
AVKQTGVEPF SDFMKKAKRL TILTHPTDES IGRTWIRGMQ NAENGLSATN KTGPLSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A9e-751139522358Auxin response factor 1
4ldw_A9e-751139522358Auxin response factor 1
4ldw_B9e-751139522358Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G102800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422676.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A251NN550.0A0A251NN55_PRUPE; Auxin response factor
STRINGEMJ095380.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]