PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G116200.1.p
Common NamePRUPE_ppa025427mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 115aa    MW: 12653 Da    PI: 4.607
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G116200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1371.1e-1142102165
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkak 65 
                         +fY++YA++vGF+++k++skk  + ge +  t+ Cs++g ++++ ++     ++ ++ +++Cka+
  Prupe.6G116200.1.p  42 DFYKKYANRVGFQMKKRSSKKG-DCGELKYVTLSCSRSGIPQSTASN---VLKPYPSVKCNCKAQ 102
                         6***************998887.8889****************9888...89999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-842102IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MSEENDEVEI GETGLENTMS PEETTQEPKV NMIFNTADEV LDFYKKYANR VGFQMKKRSS  60
KKGDCGELKY VTLSCSRSGI PQSTASNVLK PYPSVKCNCK AQNAQDSHGG MDDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G116200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199084.26e-61protein FAR-RED IMPAIRED RESPONSE 1
RefseqXP_021830652.18e-63protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLM5W3T55e-80M5W3T5_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ079768e-81(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13793717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.18e-10FAR1-related sequence 10