PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G124000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23406.7 Da    PI: 4.3636
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G124000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF466.8e-15953145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        k+i+nk   + tfskRr+g++ KA  L+ L +a++a+i fs+ +k
  Prupe.6G124000.1.p  9 KKINNKNYLKATFSKRRKGLFRKATDLCCLSGAQIAIITFSPGNK 53
                        68999************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-22160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-22172IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.016161IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-12323IPR002100Transcription factor, MADS-box
PfamPF003194.3E-161056IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGKRKIDIKK INNKNYLKAT FSKRRKGLFR KATDLCCLSG AQIAIITFSP GNKAFIFGQP  60
SAETVIDRFL GEQASCTTAD HDDEGIGPVE GEDGHEDLEA NHDEEDIGSV DAEDSHEDSE  120
AHQEEEKEDE AGGGGDGEKV SVWWDEPIDE NLGLHELKKY KGLLECLKEN VASKLDERNK  180
REFYTKDYLA MLNSEIGSTS TTCQERDLCD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G124000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007207676.21e-154agamous-like MADS-box protein AGL62
TrEMBLA0A251NPA81e-152A0A251NPA8_PRUPE; Uncharacterized protein
STRINGXP_008228431.11e-141(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-24AGAMOUS-like 62