PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G127700.1.p

Common Name

PRUPE_ppa023619mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 311aa MW: 35124 Da PI: 8.4506

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G127700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	152	171	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Prupe.6G127700.1.p 152 FACSICSKTFNRYNNMQMHM 171 78*****************9 PP
2	zf-C2H2	11.5	0.00092	236	258	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k+F k + ++H +++ Prupe.6G127700.1.p 236 FMCRKCAKTFAVKGDWRTHEKNC 258 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.51E-5	143	175	No hit	No description
PROSITE profile	PS50157	10.45	152	179	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.17	152	174	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-5	152	171	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	154	174	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	199	231	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.72E-5	222	256	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.8E-5	222	256	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	78	236	256	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MGLWNHHVEG QNLCFQAPPF IEWLKPPSSF SSSSSPSFCL SENSTTMQCL PLLSQFTDTK 60 PMKIEDAGVQ KEGFGVKEEK MEQVTVALRI GLPNSTSEAD QSDTHHENKK VLDLKEEEGV 120 AMRKSFHGCS FNAESRFWIP TPAQILVGPM QFACSICSKT FNRYNNMQMH MWGHGSEFRK 180 GPDSLKGTQP AAMLRLPCYC CAQGCKNNIN HPRAKPLKDF RTLQTHYKRK HGAKPFMCRK 240 CAKTFAVKGD WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI RSFGKGHSPH PSLDGFHEDE 300 KECITGSEDD *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G127700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007207163.1	0.0	zinc finger protein WIP3
Swissprot	Q9SGD1	1e-125	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	M5W3N7	0.0	M5W3N7_PRUPE; Uncharacterized protein
STRING	EMJ08362	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-123	WIP domain protein 3

Link Out ? help Back to Top
Phytozome	Prupe.6G127700.1.p
Entrez Gene	18773139

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]