PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G139700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 833aa    MW: 99261 Da    PI: 7.5238
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G139700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP56.93.4e-185946402070
             E2F_TDP  20 see.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                         +e+ gi++ln++a++L   +v  ++RRiYDi+NVLe+++li kk kn+i+wk
  Prupe.6G139700.1.p 594 EERyGILDLNNAADTL---EV--QKRRIYDITNVLEGIGLIGKKLKNRIQWK 640
                         45569***********...99..****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003861771103IPR003107HAT (Half-A-TPR) repeat
SuperFamilySSF484521.38E-2281203IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.101.4E-2386382IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS502939.22791158IPR013026Tetratricopeptide repeat-containing domain
SMARTSM003861.2E-6105137IPR003107HAT (Half-A-TPR) repeat
SMARTSM003860.45139168IPR003107HAT (Half-A-TPR) repeat
SMARTSM003860.018170201IPR003107HAT (Half-A-TPR) repeat
SuperFamilySSF484521.11E-15202296IPR011990Tetratricopeptide-like helical domain
SMARTSM003862.1E-6203234IPR003107HAT (Half-A-TPR) repeat
PfamPF021844.5E-12204232IPR003107HAT (Half-A-TPR) repeat
PROSITE profilePS502939.058222292IPR013026Tetratricopeptide repeat-containing domain
SMARTSM003862.2E-5236271IPR003107HAT (Half-A-TPR) repeat
SMARTSM003860.28273307IPR003107HAT (Half-A-TPR) repeat
SuperFamilySSF484521.25E-31295500IPR011990Tetratricopeptide-like helical domain
SMARTSM003867.4E-5331365IPR003107HAT (Half-A-TPR) repeat
SMARTSM003861.9E-5375411IPR003107HAT (Half-A-TPR) repeat
Gene3DG3DSA:1.25.40.101.5E-11383494IPR011990Tetratricopeptide-like helical domain
SMARTSM0038615413444IPR003107HAT (Half-A-TPR) repeat
SMARTSM003867.3E-4446478IPR003107HAT (Half-A-TPR) repeat
SMARTSM003860.054480514IPR003107HAT (Half-A-TPR) repeat
SuperFamilySSF484526.83E-8503592IPR011990Tetratricopeptide-like helical domain
SMARTSM003866.9E-5516547IPR003107HAT (Half-A-TPR) repeat
SMARTSM013723.0E-16577641IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.94E-11591640IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-17592641IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.9E-16593640IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440743.66E-11661708No hitNo description
PfamPF164218.7E-9661708IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006396Biological ProcessRNA processing
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MASFKDADPT LGFLTRKDAD VMLPRPTRVK NKTPAPVQIT AEQILREARE RQEAEIRPPK  60
QKITDPTELA DYRLRKRKEF EDQIRSVRGN VRNWVKYAQW EESHKDFERA RSVWEHALEV  120
DHRNPTLWRN YAEAEMKNKF INHARNVWDR AVTLLPRIWY KYIHMEEIIG NGAGARQIYE  180
RWMNWMPDQQ GWLSFIKFEL RYNEVERARA IFERFVQCHP KVGAWIRYAK FEMKNGEVAR  240
ARNVYERAVE IMGDDEEAEQ LFVAFAEFEE RCKETDRARR VYKFALDHIP KQRVEDLYKK  300
FRRFQYQDEV RKNPLNYDFW FDYIRLEESA GNKDRIREVY ERAIANVPPV PEKRYWQPYI  360
YLWINYALYE ELDAGDMERA RNVYRECLQV IPHKKFSFAK IWLLAAGFEI RQLNLEGARK  420
ILGTAIGKSP KDKIFKKYIE IELNLGNFDR CRKLYEKYLH WSPENCYAWT KYAELEKSLC  480
ETERTRAVFE LAIAQPALDM PELLWTAYID FELSEGEFER TRELYERLLD RTKHLKVWIS  540
YAKFEASAIV EAMCSEDQDQ DYLREQTKQC VQRVRRIFEK AFNYFRTSAP ELKEERYGIL  600
DLNNAADTLE VQKRRIYDIT NVLEGIGLIG KKLKNRIQWK SYSKLSDWLI RGLDVSRTGD  660
AQVENLSDEE RRLDQQIREM QERLRDLNED ESNKKWLFVT EEDIKGLPSG FFRVKEWTPQ  720
VTYGLTKIFW VLVWFGERHC KNLPFGTIMS DADHWLLSDA DISITDVENR THPFPERCCL  780
SFHLLFIPWA GVVWNELGAI DEDYMVNVST PRPQTPPSSS TQVPATANRT KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_O0.023601173756Crooked neck-like protein 1
5xjc_J0.023601173756Crooked neck-like protein 1
5yzg_J0.023601173756Crooked neck-like protein 1
5z56_J0.023601173756Crooked neck-like protein 1
5z57_J0.023601173756Crooked neck-like protein 1
5z58_J0.023601173756Crooked neck-like protein 1
6ff4_O0.023601173756Crooked neck-like protein 1
6ff7_O0.023601173756Crooked neck-like protein 1
6icz_J0.023601173756Crooked neck-like protein 1
6id0_J0.023601173756Crooked neck-like protein 1
6id1_J0.023601173756Crooked neck-like protein 1
6qdv_S0.023601173756Crooked neck-like protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G139700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008246005.10.0PREDICTED: crooked neck-like protein 1
SwissprotP631540.0CRNL1_MOUSE; Crooked neck-like protein 1
SwissprotP631550.0CRNL1_RAT; Crooked neck-like protein 1
TrEMBLA0A251NQ570.0A0A251NQ57_PRUPE; Uncharacterized protein
STRINGXP_008246005.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-37E2F transcription factor 1