PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G147600.2.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

YABBY

Protein Properties

Length: 191aa MW: 21028.6 Da PI: 8.4158

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G147600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	227	5.1e-70	6	162	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlks.nvekeesast 94 +se+vCyv+CnfCntilavsvP +sl ++vtvrCGhC++llsvn+ + q a s+ + k++l +e++n + +++++++ Prupe.6G147600.2.p 6 MASERVCYVHCNFCNTILAVSVPCNSLQNMVTVRCGHCANLLSVNMGASLQSNAFPSQ--DPQKHHL----SSEDSNKSCgSSSSSKCSKF 90 579*****************************************999988877776..2233333....33333222202334445555 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++ e+ e ++ p + p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Prupe.6G147600.2.p 91 SHPFES---VELHDQPSISP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 162 555555...45555555556.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-72	7	162	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-8	106	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.9E-5	110	156	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MSMDLMASER VCYVHCNFCN TILAVSVPCN SLQNMVTVRC GHCANLLSVN MGASLQSNAF 60 PSQDPQKHHL SSEDSNKSCG SSSSSKCSKF SHPFESVELH DQPSISPIRP PEKRQRVPSA 120 YNRFIKEEIQ RIKASNPDIS HREAFSTAAK NWAHFPHIHF GLKLDGSKQP KLDQTFAGGD 180 QGTQKSSGFY *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.1224	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G147600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147402	4e-47	EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020423065.1	1e-125	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	3e-76	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A251NQJ7	1e-139	A0A251NQJ7_PRUPE; Uncharacterized protein
STRING	XP_008230517.1	1e-119	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-73	YABBY family protein

Link Out ? help Back to Top
Phytozome	Prupe.6G147600.2.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]