PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G159100.2.p
Common NamePRUPE_ppa001169mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 862aa    MW: 95520.4 Da    PI: 9.3462
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G159100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07216236526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C +fa+ G C++G++CkF H 
  Prupe.6G159100.2.p 216 YCTDFAK-GKCRRGSSCKFDHH 236
                         5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0083153179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216153180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5157177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929211238IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043212237IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5216236IPR000571Zinc finger, CCCH-type
SMARTSM003560.085271297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671271298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MSRSSRKRSS KWDLAEEPQF EDANVQDNGW MGKPETNDMQ RSKHDLGLAS REPLPGSRGS  60
HKIESINKGS NRYMDDSMVW DGDGNCSTRM SPGLDEWRQH HSRSPKSGWS RSLRGRSRSW  120
SRSRSRSQSW SRSPDRGYRR ESVFLDRNRS RSGVSAQLCK DFTAGRCRRA SDCQFLHEGS  180
SNYDDSWDSR HRKGGASKYS PDTGDYPLKS GRSSVYCTDF AKGKCRRGSS CKFDHHRASD  240
GYSKGSMNER ENERRKRDAS TERGADRVPH RSGDIPCKFF AAGNCRNKKY CRFSHHIQAR  300
ASPERKSRDG RWGLSDAGPA WDGPRWSDTV ALSDAAKLTA DNNGNISVPE LRPSAWSMDD  360
NRWGHGLNND NQKCADPSVT HEAAQRNEKD THLWKEDNVG AHVGLPKSRD TEKWLGDMSP  420
DWNYTIQSSN HVGKEEHSGN ALGSEPSSQV HGAASIMQPM IAERSNFLQN KDMREDGAIP  480
LPYDDRNPIE KSASSRNDLN VSANIMPRQS FDNSGQSSSA FPFSGLSTVR QGQTLIPTHP  540
QGGIVKSPQD TLSSESKSVI KLDIGDAKTS LETSLVTGIP QVPNVVGDKE LVQLTNLSAS  600
LAQFLGNHQQ HSQFYAVLNS HNAPPPLAKS EGSSEQLSAA AIQPDPVISE KPYDPIQDSR  660
ELRNSNNPVF LLPNNAEKTR VDGKVDKPSN VVSPSSFPSG ANGNDYLQAH NSVEPKQKNC  720
QLSQLEPLAK SEIVKGNSEF GAQESKNVKE ESKSPDIGPL EGTEKDGAEE GKKSKEVKGS  780
RAFKFALVEF VKDLLKPTWK EGQINKDAYK TIVKKVVDKV TSTMQGANIP QTQEKIDHYL  840
SFSKPKLTKL VQAYVEKTQK G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G159100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020421061.10.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLA0A251NR600.0A0A251NR60_PRUPE; Uncharacterized protein
STRINGEMJ096020.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-11C3H family protein