PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G162600.1.p
Common NamePRUPE_ppa003808mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 548aa    MW: 62281.3 Da    PI: 5.3898
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G162600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.51.4e-2653135187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+laL+++r++m+ ++++++ k plW+evs+km e g +r++k+Ckek+en+ k+++++ke+ + +     + +++f+qlea
  Prupe.6G162600.1.p  53 RWPRQETLALLKIRSDMDAEFKEASIKVPLWQEVSRKMGELGHNRTAKKCKEKFENIYKYHRRTKESGRPN----GKAYRFFEQLEA 135
                         8*****************************************************************99974....4569*****985 PP
2trihelix95.54.8e-30383467186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+k+ev aLi++r + + +++++  k+plWee+s++m + g+ rs+k+Ckekwen+nk+y++ike++kkr +e+s+tc y + l+
  Prupe.6G162600.1.p 383 RWPKEEVEALIKIRADFDLQYQESGPKGPLWEEISAAMVKLGYDRSAKRCKEKWENINKYYRRIKESNKKR-PEDSKTCGYVRLLD 467
                         8*********************************************************************8.99******998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.2E-450112IPR001005SANT/Myb domain
PROSITE profilePS500907.0552110IPR017877Myb-like domain
PfamPF138378.5E-1952136No hitNo description
CDDcd122037.58E-2352117No hitNo description
PROSITE profilePS500907.898376440IPR017877Myb-like domain
SuperFamilySSF466893.59E-5380453IPR009057Homeodomain-like
SMARTSM007176.1E-5380442IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-5381439IPR009057Homeodomain-like
PfamPF138372.6E-21382468No hitNo description
CDDcd122031.44E-26382447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MLENSKLPEN PSTATSNQNN EEVAGGGGPA SVGFEEEDRA GLEEGYRNWS GNRWPRQETL  60
ALLKIRSDMD AEFKEASIKV PLWQEVSRKM GELGHNRTAK KCKEKFENIY KYHRRTKESG  120
RPNGKAYRFF EQLEALDHHD FELPPPPASE KVQTSVAEIA TNPTNVVYNA IPCSSIQHPD  180
SSFVENSSST TSSSSKESEG THKKKRRLTE FFERMMNEVI DKQENLQKKF VEVLEKHEQD  240
RIAREEAWKM QELARIKRER EILVQERSVA AAKDAAVLAF LQKFSEQSGT MQFPEQAFSV  300
HFPAQPPSSM QFPEQPSPVQ LPEQPPSGQF PEQSTPVQLP VNSQADTLME KQEKTNDANV  360
VHMSLDKQER NNGRSYMHMS SSRWPKEEVE ALIKIRADFD LQYQESGPKG PLWEEISAAM  420
VKLGYDRSAK RCKEKWENIN KYYRRIKESN KKRPEDSKTC GYVRLLDALH NKKTNSVESQ  480
VNSTYELKPE ELLMHMMGGQ AEQHQPETVT EDGDSENVDQ IQGDDENADG DGYQIASGNP  540
SSMAIMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206KKKRR
2202207KKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G162600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007213893.10.0trihelix transcription factor GT-2
TrEMBLM5WMS00.0M5WMS0_PRUPE; Uncharacterized protein
STRINGEMJ150920.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.28e-58Trihelix family protein