PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G175900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 245aa    MW: 28383.2 Da    PI: 7.7827
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G175900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-16956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+ll   ++++G g W+ ++ + g++R++k+c++rw++yl
  Prupe.6G175900.1.p  9 KGAWTKEEDDLLRLFIQKHGDGKWNQVSLHSGLKRCRKSCRLRWLNYL 56
                        79********************************************97 PP
2Myb_DNA-binding44.14.9e-1462105146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Prupe.6G175900.1.p  62 RGHFAEDEIDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNT 105
                         678899****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.249460IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-21558IPR009057Homeodomain-like
SuperFamilySSF466891.48E-276103IPR009057Homeodomain-like
SMARTSM007178.5E-15858IPR001005SANT/Myb domain
PfamPF002491.5E-15956IPR001005SANT/Myb domain
CDDcd001673.81E-101156No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2259111IPR009057Homeodomain-like
SMARTSM007173.9E-1361109IPR001005SANT/Myb domain
PROSITE profilePS5129417.55961111IPR017930Myb domain
PfamPF002497.7E-1362105IPR001005SANT/Myb domain
CDDcd001671.09E-867107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDSSSGVRKG AWTKEEDDLL RLFIQKHGDG KWNQVSLHSG LKRCRKSCRL RWLNYLKPNI  60
KRGHFAEDEI DLILRLHKLL GNRWSLIAGR LPGRTANDVK NFWNTRLGRK MASGVVEKVK  120
EQSPETKKDI AVRPQPRRLS KTSHYLSGHK TVTSHHNQPE ENFSKLPILP SSPIEDEVDW  180
WETLLEDEDN VERTKCSCLV LEEDHFTNCC VEDLAPWTRT DFRYLEDCPC WIGSSDMDLW  240
NLST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-23911127128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G175900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9999850.0KF999985.1 Prunus persica MYB104 mRNA, complete cds.
GenBankKP7722840.0KP772284.1 Prunus cerasifera MYB10.4 transcription factor (MYB10.4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420992.10.0transcription factor MYB114
SwissprotQ9FNV93e-52MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0K1TPI01e-180A0A0K1TPI0_9ROSA; MYB10.4 transcription factor
TrEMBLW8QQ691e-180W8QQ69_PRUPE; MYB104
STRINGXP_008233293.11e-164(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-54myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]