PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G176300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 244aa    MW: 28047.7 Da    PI: 9.8097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G176300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.7e-181158148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEdell ++++q+G g W  ++ + g++R++k+c++rw++yl
  Prupe.6G176300.1.p 11 KGAWTREEDELLRQYIQQHGEGKWQQVSLKAGLNRCRKSCRLRWLNYL 58
                        79********************************************97 PP
2Myb_DNA-binding30.86.9e-1066105344
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          + ++E +l v++ k+lG++ W++Ia +++ gRt +++k+ w
  Prupe.6G176300.1.p  66 DFAEDEVDLMVRLRKLLGNR-WSLIAGRLP-GRTSNHVKNCW 105
                         6778999*************.*********.********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.818162IPR017930Myb domain
SuperFamilySSF466893.37E-278105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-22860IPR009057Homeodomain-like
SMARTSM007171.3E-151060IPR001005SANT/Myb domain
PfamPF002491.7E-161158IPR001005SANT/Myb domain
CDDcd001673.40E-111358No hitNo description
Gene3DG3DSA:1.10.10.608.0E-1861113IPR009057Homeodomain-like
SMARTSM007174.9E-763111IPR001005SANT/Myb domain
PROSITE profilePS5129412.85963113IPR017930Myb domain
PfamPF002491.2E-765106IPR001005SANT/Myb domain
CDDcd001672.55E-469105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEGNNLLRVR KGAWTREEDE LLRQYIQQHG EGKWQQVSLK AGLNRCRKSC RLRWLNYLRP  60
NIKTGDFAED EVDLMVRLRK LLGNRWSLIA GRLPGRTSNH VKNCWSTRLR KNMSSGAEKD  120
KTLETTKTII LRPQPRTFSK KPNCLSSPAP TLQHIQLQEN FNWPLPSSPP IENGIDEWKS  180
QLADTNSVER AVCSGFQLEE DFFTNFWVEN IAQNKGTGVN SADEGLLSNS DFSFHLWNFS  240
KEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-201111327128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G176300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9999870.0KF999987.1 Prunus persica putative MYB106 mRNA, complete cds.
GenBankKP7722860.0KP772286.1 Prunus cerasifera MYB10.6 transcription factor (MYB10.6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422250.11e-180transcription factor MYB113
SwissprotQ9FNV92e-52MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0K1TPI61e-179A0A0K1TPI6_9ROSA; MYB10.6 transcription factor
TrEMBLW8QG901e-179W8QG90_PRUPE; Putative MYB106
STRINGXP_008240567.11e-167(Prunus mume)
STRINGXP_008245868.11e-167(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-54myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]