PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G188400.1.p
Common NamePRUPE_ppa008361mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 349aa    MW: 38735.7 Da    PI: 5.3211
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G188400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2249.9e-08140162123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++Cgk F+r  nL+ H+r H
  Prupe.6G188400.1.p 140 HYCEICGKGFKRDANLRMHMRAH 162
                         68*******************99 PP
2zf-C2H210.70.0017226249123
                         EEETTTT.EEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                         y+C+ C+ ksFs   +Lk+H++ +
  Prupe.6G188400.1.p 226 YSCNRCNkKSFSVVADLKSHLKHC 249
                         99*******************977 PP
3zf-C2H213.30.00024257273521
                         TTTEEESSHHHHHHHHH CS
             zf-C2H2   5 dCgksFsrksnLkrHir 21 
                          Cg+sFsrks L  H+ 
  Prupe.6G188400.1.p 257 TCGTSFSRKSKLFGHMA 273
                         6**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-6137163No hitNo description
SMARTSM003550.002140162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.884140167IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-6140162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128745.3E-4141160No hitNo description
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
SMARTSM0035534188221IPR015880Zinc finger, C2H2-like
SMARTSM0035513226248IPR015880Zinc finger, C2H2-like
SMARTSM00355230254278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSFTGQPLNI PAACSVAPTA EDPDPELPLR NLSMVRTRMD LLQCFLTESI NTNALISKDQ  60
MDMVSAGIAS AIREIISNGA ALLACSQNPG PASDQTRTPA ANNEVATEVK KEEENDFQND  120
DAEGEIVEVD AMELLAEHIH YCEICGKGFK RDANLRMHMR AHGNRFKTPE ALAKPDKNPA  180
EPSRKTRFSC PYIGCNRNKG HVKFRALKSV ICVKNHFKRS HCPKMYSCNR CNKKSFSVVA  240
DLKSHLKHCG EARWRCTCGT SFSRKSKLFG HMALFEGHMP AVEDEKSVKA ATAMDQDEDE  300
EEEVEENTTS FEGREMGSNF FEDTEFSELL GGFGSIDGYF LDDMLVDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G188400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422643.10.0zinc finger protein STOP1 homolog
TrEMBLA0A251NSI50.0A0A251NSI5_PRUPE; Uncharacterized protein
STRINGEMJ067120.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.28e-78C2H2 family protein