PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G193400.1.p
Common NamePRUPE_ppa008318mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 338aa    MW: 38048.2 Da    PI: 4.9818
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G193400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.1e-1958111356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Prupe.6G193400.1.p  58 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
                         56689************************************************9 PP
2HD-ZIP_I/II130.66.4e-4257149193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+d+ +Lk++yd+lk + ++L++e+e+L +e+
  Prupe.6G193400.1.p  57 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDFGVLKANYDSLKLNYDNLQHENEALVKEI 147
                         69***************************************************************************************99 PP

         HD-ZIP_I/II  92 ke 93 
                         k+
  Prupe.6G193400.1.p 148 KQ 149
                         87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-1945115IPR009057Homeodomain-like
PROSITE profilePS5007117.57253113IPR001356Homeobox domain
SMARTSM003896.1E-1856117IPR001356Homeobox domain
PfamPF000464.0E-1658111IPR001356Homeobox domain
CDDcd000865.22E-1658114No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1960118IPR009057Homeodomain-like
PRINTSPR000319.9E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000319.9E-693109IPR000047Helix-turn-helix motif
PfamPF021832.2E-17113155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MKRLGSSDSL GAMISICPST AEEQSPRNNH VYRRDFQSML DGLDEEGCVE EGGHVSEKKR  60
RLSVEQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDFG  120
VLKANYDSLK LNYDNLQHEN EALVKEIKQL KSKLQEENTE SNNLSVKEEQ MVAKDQSNYK  180
VVDHELSKSP PPPPLGSSVP ATESKELNFE SFNNTNNGAV GLEAVSLFPD FKDGSSDSDS  240
SAILNEDNSP NLTISSSGML QNHQLMKSPA STSLKFNCCS SSSPSSSSMN CFQFQKTYHP  300
QFVKIEEHNF FSSEEACSFF SDEQAPTLQW CCPDQWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.14200.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G193400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6219084e-92AB621908.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH184.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205507.10.0homeobox-leucine zipper protein ATHB-6 isoform X1
TrEMBLM5W0090.0M5W009_PRUPE; Uncharacterized protein
STRINGEMJ067060.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.15e-67homeobox protein 6