PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G208900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24181.7 Da    PI: 9.9635
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G208900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.62.5e-261059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgkl+e+ss
  Prupe.6G208900.1.p 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLMIFSSTGKLFEFSS 59
                        8***********************************************96 PP
2K-box80.15.5e-2777170898
               K-box   8 s...leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                         +   +++++++ +q+e+a+L++++++L++ +R+ +Ge+L  Ls+keL+ Le+qLe sl+ iR +K+++l+++ieel +k + ++++n++L 
  Prupe.6G208900.1.p  77 QqllNQASEMKFWQREVANLRQQLQSLKEHHRQCMGEQLYGLSVKELKGLESQLEMSLQGIRMQKEQILTDEIEELNEKSNLVHQQNMELF 167
                         233468899*********************************************************************************9 PP

               K-box  96 kkl 98 
                         kk+
  Prupe.6G208900.1.p 168 KKV 170
                         986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.0E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.866161IPR002100Transcription factor, MADS-box
CDDcd002659.80E-43278No hitNo description
SuperFamilySSF554551.31E-31286IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014867.7E-2582170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.28486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLMIFSS TGKLFEFSSN  60
SMKSVIEKYN KSKEGQQQLL NQASEMKFWQ REVANLRQQL QSLKEHHRQC MGEQLYGLSV  120
KELKGLESQL EMSLQGIRMQ KEQILTDEIE ELNEKSNLVH QQNMELFKKV YGTTAVNSES  180
RNACIPYGMS ISDDSHVPNQ LQLRRPNQQT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-21181181MEF2C
5f28_B6e-21181181MEF2C
5f28_C6e-21181181MEF2C
5f28_D6e-21181181MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Primarily expressed during lateral root formation and embryogenesis. {ECO:0000269|PubMed:11855641}.
UniprotTISSUE SPECIFICITY: Specifically expressed in root. {ECO:0000269|PubMed:11855641}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G208900.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420908.11e-154MADS-box transcription factor 23
RefseqXP_020420909.11e-154MADS-box transcription factor 23
SwissprotQ9SZJ62e-90AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A251NUZ51e-152A0A251NUZ5_PRUPE; Uncharacterized protein
STRINGXP_008236592.11e-145(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.18e-93AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]