PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G212000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 362aa    MW: 40309.3 Da    PI: 6.5886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G212000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12185231455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Prupe.6G212000.1.p 185 DHVLAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYVKHLQ 231
                         58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.466181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16185243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-12186232No hitNo description
PfamPF000104.3E-10186231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16186240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-15187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDMISSAKWV SDLEMEDPTF IHQYEMNSLD YSLDDLNFQS FSSESYSSYP NFTPKATHNF  60
SNASIETPQQ AGTHERPAKQ PKNHTTWNPC TTDHTIMAKA ASSSSSHLIS FDNSNSSPPT  120
SSQQFYGTLD NTMKPKNEVE YSNGKLNLTT LISQGSYDPQ TCSPKHGQGI KRAATVTRSP  180
LHAQDHVLAE RKRREKLSQR FIALSALVPG LKKMDKASVL GDAIKYVKHL QERTKMLEEK  240
AVKKTVEAVV FVKRTQYSAD DDISSSDENF ESSSDQPLPE IEARVSDKEV LIRVHCEKTK  300
GCLAKILSEI ESLDLTIVNS SVLPFGNSTL DITVIAQMDA EFSMTVKDLV KNLRQSLLKF  360
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-12185243866Transcription factor MYC2
5gnj_B2e-12185243866Transcription factor MYC2
5gnj_E2e-12185243866Transcription factor MYC2
5gnj_F2e-12185243866Transcription factor MYC2
5gnj_G2e-12185243866Transcription factor MYC2
5gnj_I2e-12185243866Transcription factor MYC2
5gnj_M2e-12185243866Transcription factor MYC2
5gnj_N2e-12185243866Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194ERKRRE
2190195RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G212000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420848.10.0transcription factor bHLH18
RefseqXP_020420849.10.0transcription factor bHLH18
TrEMBLA0A251NTJ50.0A0A251NTJ5_PRUPE; Uncharacterized protein
STRINGEMJ075500.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-56bHLH family protein