PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G213000.1.p
Common NamePRUPE_ppb022733mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 166aa    MW: 18708.6 Da    PI: 9.8335
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G213000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-201157349
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        ie +s r+v fskRr g++KKA+EL+++C++eva+iifs  gk + +
  Prupe.6G213000.1.p 11 IETESARHVAFSKRRSGLFKKASELCTMCAVEVAIIIFSIGGKAFSF 57
                        8999***********************************99987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.31E-23172IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-28160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.17161IPR002100Transcription factor, MADS-box
CDDcd001205.69E-25260No hitNo description
PRINTSPR004045.5E-16323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-211157IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGRKKTQMQL IETESARHVA FSKRRSGLFK KASELCTMCA VEVAIIIFSI GGKAFSFGHP  60
NVHFVFNRLR CSENPDASTS SNEAAGQDPI LHDLNKTHSD LIENVGLVKK LGKKMRRAIM  120
EKPKPDWFYA PRESLSMEVL YEMKEALEAV QENVRRDKER LLAQA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G213000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007207011.11e-121agamous-like MADS-box protein AGL61
TrEMBLM5WN211e-120M5WN21_PRUPE; Uncharacterized protein
STRINGEMJ082101e-121(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2040945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-31AGAMOUS-like 61